Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17070 795 / 0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT2G42330 724 / 0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2) AT3G09850 56 / 1e-07 D111/G-patch domain-containing protein (.1) AT5G26610 52 / 7e-07 D111/G-patch domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G076000 [exp] 1202 / 0 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.018G113600 [exp] 62 / 8e-10 AT3G09850 524 / 3e-176 D111/G-patch domain-containing protein (.1) Potri.006G189501 [exp] 58 / 1e-08 AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1) Potri.005G002700 [exp] 53 / 3e-07 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.013G002100 [exp] 52 / 6e-07 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000930 [exp] 965 / 0 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10002252 [exp] 586 / 0 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10006830 [exp] 513 / 3e-176 AT1G17070 469 / 3e-157 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10002251 [exp] 194 / 1e-58 AT1G17070 132 / 2e-36 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10019584 [exp] 68 / 2e-11 AT3G09850 378 / 7e-120 D111/G-patch domain-containing protein (.1) Lus10036327 [exp] 68 / 2e-11 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1) Lus10031446 [exp] 54 / 2e-07 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10001513 [exp] 53 / 3e-07 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain CL0449 [poplar] [flax] PF07842 [poplar] [flax] GCFC GC-rich sequence DNA-binding factor-like protein
Representative CDS sequence Show only first row Show all	>Potri.019G043200.2 pacid=42773607 polypeptide=Potri.019G043200.2.p locus=Potri.019G043200 ID=Potri.019G043200.2.v4.1 annot-version=v4.1 ATGGAGAAGACAGCAAAAGGAGTGGGAAAAAGCAAGGAAGCGAAAGATGGGGATGTTGGGGAGTTTGAGAAGCATACAAAAGGAATTGGGATGAAGTTGT TGGAGAAAATGGGTTATAAGGGAGGTGGGCTGGGGAAGAATCAGCAAGGAATCGTAGCTCCAATTGAAGCAAAGATGAGGCCGAAAAATATGGGAATGGG GTTCAATGATTTTAAAGAAGCATCAGCTAAGTTGCCTCAGTTGCAGGAGACGGAAACTGTGAGCCAAAGGCAGAGTCAGACAGTGGGGAGAATGAAGGAC AGGCGATGGATGAAGGGCATGAAGAAGCAGCAGCAGGAGAAGTACATAACAGCAGAGGAGTTGTTGGCAAATAAGGAAGAACAAGGTTTTGAGGTTTTCC AGAAGTTGATTGATATGCGGGGGCCACAAGTGAGGGTGTTGATGAATTTGGAGAATCTGAATGCAGAAGAGAAGGCCAAGGAGAATGATGTTCCAATGTC AGAACTTCAGCATAATTTGAGGTTGATTGTGGATTTGGCAGAGCTTGATATACAGAAGATTGATAGAGACCTAAGGAACGAAAGGGAGACTGCTATAAGC TTGCATCAGGAGAAGGAGAAGTTGGAAACAGAGGCCGCACGCCAGAAGAAGCAACTGGATAACATGGAAGAGATCATGAGTGTGGTGAGCCATATTGAGG AACAGAAGTCTTCAGGAACTTTGACCTTGGATTCACTTGCAAAGTATTTCACAGACGACATAAAGAGGAAATTTGCAGATGATTATAAGCTTTGCAACTT GACTTGCATTGCTTGTTCATATGCTTTACCTTTGTTTATTAGAGTATTTCAGGGCTGGGATCCTCTTAGAAACCCACTGCATGGATTGGAAGCATTAGAA TTATGGAAGAGTGTGCTGCAAGGTGAGGAAAGTAGTGATATATGGGATGAATCCACGCCTTATGCACAGTTAGTATCAGAAGTAGTTTTGCCTGCTGTAA GAATATCTGGAACTAGTACTTGGGAGCCTAGGGACCCTGAACCTATGCTTAGATTTTTGGAGTCTTGGGAAAATTTGTTCCCTGCATCAGTTGTTCAGAG CATATTGGGTAATATAGTTATGCCAAAATTATATAGTGCTGTTGACTCGTGGGACCCTCGTCTAGAAACTGTTCCGATACATGTTTGGGTACATCCATGG CTGCCGCAGTTGGGACTGAAATTTGAGGGTTTGTACCAGATGATACGTATGAAGTTAAGCATGGTTCTTGATGCTTGGCACCCGAGTGATGCATCTGCTT ACACTATCTTATCGCCCTGGAAAACTGTCTTTGATTCAGCCAGCTGGGAAAGTCTTATGCGCAGATTTATAGTTCCTAAGTTGCAGGTTGCATTGCAAGA GTTCCAAATAAACCCAGCTAATCAGAAGCTTGATCATTTCTATTGGGTTATGTCATGGGCATCTGCAATTCCAATTCATCTCATGGTTGACTTGTTGGAG AGGTTTTTCTTTTCAAAGTGGCTGCAGGTTTTGTATCACTGGCTTTGTTCAAATCCTAACTTGCAAGAGATTCATAAATGGTATGTTGGTTGGAAAGGAC TTCTTCCACCAGAGCTTCAGGCACATGAAAATATTCGGTATCAATTTACTCTTGGACTCAACATGATTGATCGGGCTATTGAAGGTATGGAAGTGGTCCA ACCTGGTCTGAGGGAGAAGATGGCGCAGGAGCAGAGGCAGTTTGAGGTCCAGGAAAGAGCTGCAGCGCATGCTCAATATCAAACTGCAGCTGGCATGGGT AGCACAACAAAAATGGATGGTTTTGGTGGTGATGCGGTTGAGATGACTTTGAAAGAAGTTGTTGAGGCACATGCGCAACATCATGGCTTGCTTTTCAAGC CAAAACCTGGCAGGATGCATGACGGTCACCAGATATATGGGTATGGTAACTTAAGCATATATGTGGACCCTAGACATGAAAGGTTATATGTCCAGAAGGA GCAAGATTGGTTACTTACAAACCTTGATAATTTGCCTGAGATGCATAATAGTTCTCTTAAAAAGGGACGCTGA
AA sequence Show only first row Show all	>Potri.019G043200.2 pacid=42773607 polypeptide=Potri.019G043200.2.p locus=Potri.019G043200 ID=Potri.019G043200.2.v4.1 annot-version=v4.1 MEKTAKGVGKSKEAKDGDVGEFEKHTKGIGMKLLEKMGYKGGGLGKNQQGIVAPIEAKMRPKNMGMGFNDFKEASAKLPQLQETETVSQRQSQTVGRMKD RRWMKGMKKQQQEKYITAEELLANKEEQGFEVFQKLIDMRGPQVRVLMNLENLNAEEKAKENDVPMSELQHNLRLIVDLAELDIQKIDRDLRNERETAIS LHQEKEKLETEAARQKKQLDNMEEIMSVVSHIEEQKSSGTLTLDSLAKYFTDDIKRKFADDYKLCNLTCIACSYALPLFIRVFQGWDPLRNPLHGLEALE LWKSVLQGEESSDIWDESTPYAQLVSEVVLPAVRISGTSTWEPRDPEPMLRFLESWENLFPASVVQSILGNIVMPKLYSAVDSWDPRLETVPIHVWVHPW LPQLGLKFEGLYQMIRMKLSMVLDAWHPSDASAYTILSPWKTVFDSASWESLMRRFIVPKLQVALQEFQINPANQKLDHFYWVMSWASAIPIHLMVDLLE RFFFSKWLQVLYHWLCSNPNLQEIHKWYVGWKGLLPPELQAHENIRYQFTLGLNMIDRAIEGMEVVQPGLREKMAQEQRQFEVQERAAAHAQYQTAAGMG STTKMDGFGGDAVEMTLKEVVEAHAQHHGLLFKPKPGRMHDGHQIYGYGNLSIYVDPRHERLYVQKEQDWLLTNLDNLPEMHNSSLKKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17070			GC-rich sequence DNA-binding f...		Potri.019G043200 [exp]	0	1
AT2G18220			Noc2p family (.1)		Potri.003G213450 [exp]	1.00	0.9528
AT2G18220			Noc2p family (.1)		Potri.003G213601 [exp]	2.44	0.9343
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G125951 [exp]	2.44	0.9129
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	2.44	0.9315
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.017G149500 [exp]	3.74	0.9075
					Potri.003G014056 [exp]	4.35	0.8830
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129100 [exp]	4.47	0.9000
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Potri.001G178900 [exp]	4.47	0.9166
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Potri.001G150400 [exp]	6.63	0.8993
					Potri.010G228883 [exp]	7.07	0.9136

Compare expression of checked genes

Potri.019G043200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.