Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35980 1088 / 0 YAK1 yeast YAK1-related gene 1 (.1.2) AT2G40120 203 / 6e-56 Protein kinase superfamily protein (.1) AT3G17750 197 / 1e-51 Protein kinase superfamily protein (.1) AT1G73460 194 / 2e-50 Protein kinase superfamily protein (.1) AT1G73450 194 / 2e-50 Protein kinase superfamily protein (.1) AT4G32660 177 / 1e-48 AME3 Protein kinase superfamily protein (.1.2.3) AT4G24740 174 / 6e-47 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G53570 174 / 1e-46 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT3G25840 166 / 8e-43 Protein kinase superfamily protein (.1.2) AT1G13350 162 / 7e-41 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G075300 [exp] 1555 / 0 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.008G069000 [exp] 216 / 2e-59 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 203 / 9e-55 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.006G244400 [exp] 191 / 4e-53 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G039700 [exp] 194 / 1e-50 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.015G033400 [exp] 192 / 6e-50 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.015G085700 [exp] 174 / 4e-47 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 172 / 2e-46 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 171 / 6e-46 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020366 [exp] 1222 / 0 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10009542 [exp] 1208 / 0 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10028283 [exp] 211 / 1e-57 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 211 / 3e-57 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 195 / 7e-51 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 195 / 8e-51 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 194 / 2e-50 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10036878 [exp] 177 / 7e-48 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 172 / 4e-46 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10043309 [exp] 167 / 2e-44 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.019G043400.6 pacid=42773761 polypeptide=Potri.019G043400.6.p locus=Potri.019G043400 ID=Potri.019G043400.6.v4.1 annot-version=v4.1 ATGGATGGGGTCAGTCCGAATGAGGCCCAGGAATTGGATGGGCCATCGGTTCCATGGCGGCCGAGGCAGCTGGCATTTGGACATTACAGGCAGGAGAGTG AACCTGCCAAAAAGGGACAAACTTTGCGTGTTGTCGTAAGAAGTCCTTTGGTTGCCAGACTAACCAAAGACATAGTCGAAACGTATCAAACATGCAATCC ACAATTCAAATATTCAGAAGAATTAAATCCAAAACGATATTTGACCAGCCCATCAGCTGGAGTCCTCAATGATGGCCATGATAATGTGAACTCGGATCTT ATTCTGACTGTGAACTTTGCTTTGATCAATTTAGACACACACAGAAGATACATAGTCAAAGATGTTCTTGGTCATGGGACTTTTGGGCAGGTTGCTAAAT GCTGGGTCGCAGAAACTAACAGTTTTGTTGCTCTGAAGATAATAAAAAATCAACCAGCTTACTATCAGCAAGCTCTGGTTGAAGTATCTATCTTGACAAC GTTAAACAAGAAGTATGATCCTGATGATAAGCATCACATTGTTCGTATTTATGATTACTTTGTATACCAGCGGCACTTATGCATCTGTTTTGAACTTCTT GACACCAATCTGTATGAGCTTATCAAGATAAATCAATTTAGGGGGTTATCATTGAGCATTGTCCAATTGTTCTCTAAGCAGATTTTACGTGGATTGGCTC TATTAAAAGATGCTGGGATAATCCATTGTGATCTGAAGCCAGAAAACATTCTTCTGTGCACAAGTGTGAAACCAGCAGAGATTAAAATAATTGACTTTGG ATCAGCATGCATGGAAGATCGCACTGTTTACTCCTACATTCAGAGCCGTTACTATAGATCTCCTGAAGTTCTTCTAGGTTATCAATATTCTACAGCTATT GACATGTGGTCCTTTGGGTGCATAGTTGCAGAACTGTTTCTAGGATTGCCACTTTTTCCCGGTGCTTCAGAATTTGATCTCTTGAGGAGAATGATTGAAA TACTCGGAGGACAACCCCCTGATTATGTTCTAAAAGAGGCAAAGAATGCAAGAAAGTTCTTCAAGTGCATTGGGAGTGTTCATAATTTAGAGAATGGTGA AGTTTCCTTGGGAGGAAGAAGTGCATACCAAGCATTAAAAGTGGAAGAATATGAATCTATAGAGCTGAAAAAACCATCGATTGGGAAGGAGTATTTCCAT CATATGAACCTCGAGGCAATTGTTACAAACTATCCTTACAAAAAGAATTTGCCTGAGGAAGATATTAAGAAAGAAAGTCAAATTCGATTAGCTTTGATTG ATTTCTTGAGGGGACTTGTTGAGTTCGATCCTGCAAAACGATGGTCCCCTTTTCAAGCGTCAAAACACCCTTTTGTAACTGGGGAACCTTTCATGTGCCC ATTCAAGCCGCCTCCAGAGACCCCTTGTATGCCTGTTGCCCAAAATATTAAGGTGGACCATCACCCAGGTGGAGGGCATTGGTTCGCTGCTGGTCTCTCT CTTAATGATCCTGGAAGGACCAGAGTTTCCTTGCATAATAGCCCTCATTTCCAGGCAGTTCCATATGGTCATGGTGCTAGTTATGGTAGTGTTGGAAGCC ATGGTAGCTATAATGATGGTATTGGCCTTGGAAGCAGCTATGGAAGCTATGGAGATGGTAGTAATATGTTTGCATATTATTCACCAGTTGCTCCATCTGG CATGAACATGCATCCACAGGCTGGTCTGTCAATGCTTGGAAATAGTCCAGATGCAAGATGGAGGTTTATTCAATATTCACATGGAAATGGTCTTGGTATG AGTCCGTCAGCAGGAAATTTTGCACCACTGCCCCTTGGAACCAGTCCCTCACAGTTTACTCCACCAAGTTCCTACTGTCAAGCTTCAGCTGGTTCTCCTG GACATTATGGTCCAACTTCCCCTGCAAGAAGCTGCAGTCATGGATCACCTTTAGGAAAAATGGCTGCAGTTACACAATTCAATAGAAGAAAACGTTGGGG GTATTCTGGAAGTTCTCAATCTCAGGAGTCTACATCTTTGTCAAATTGGCAAGGACAATCAACTGATGGTGCTTGCTCTAACCAAGCTGAGGGAAATCCT CCAGTACTTGGTAGTTTACCCGCACATTGGCAGTCAAGCTGGATGCAGCAACAAGGAGGCAGTGGAAGTACAGCATGTCCCTCAGCCATTCAGAGCATTC CAGGCTCGTTTAAGCCTGTTGCTAATATGAAATGCCCTCAAAGTGCAGGGCCTATTCATGATATGCCCGAGACTAACCTTTCATTGCCAGATCCAGGGGA TTGGGATCCTAATTACAGCGATGAACTTCTTCTGCAAGAGGATGGTTCAGATATGAGTTTCTTAAGCTCTGAGTTTAGCAATAGCATGCATCTTGGTTCT GGTGATCCAATGGTAGGTGTTGGAAGATCCAACCGTGCTTCAAATGCGAGCTCAAGTTCATTAAACCAAAGACAAAATGGGCCTCTTCATGCATTTTCAC ATGTTGACGTGGGCAGCCCTCCTTCAGCTCATGATTTTCATGCTGGATATGGCCGTTCAATTTCAAAGCCTTCTTATTTTACACCTCATGTCTCACAAAA TTCTCCAAGCCGTTTAGGACAGCGGTTCAGTCATGGAAGGCTTGCTGTTCGGGGTAGTGAATGGAATCCTATTAAGGTCCAGCCCCCCTCTTCCAGCTTC AGTTCAGGGGGGCAACGTTCTCCAGGAAGTAGTTCATTGAGCAACAGCATGCCATGGGGGCGTAGGGCCAATTTCAATAGCATTCCGTCACCATCCCGAG GAAGAAAAGATCTTGGAAGGATTGCCTAG
AA sequence Show only first row Show all	>Potri.019G043400.6 pacid=42773761 polypeptide=Potri.019G043400.6.p locus=Potri.019G043400 ID=Potri.019G043400.6.v4.1 annot-version=v4.1 MDGVSPNEAQELDGPSVPWRPRQLAFGHYRQESEPAKKGQTLRVVVRSPLVARLTKDIVETYQTCNPQFKYSEELNPKRYLTSPSAGVLNDGHDNVNSDL ILTVNFALINLDTHRRYIVKDVLGHGTFGQVAKCWVAETNSFVALKIIKNQPAYYQQALVEVSILTTLNKKYDPDDKHHIVRIYDYFVYQRHLCICFELL DTNLYELIKINQFRGLSLSIVQLFSKQILRGLALLKDAGIIHCDLKPENILLCTSVKPAEIKIIDFGSACMEDRTVYSYIQSRYYRSPEVLLGYQYSTAI DMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDYVLKEAKNARKFFKCIGSVHNLENGEVSLGGRSAYQALKVEEYESIELKKPSIGKEYFH HMNLEAIVTNYPYKKNLPEEDIKKESQIRLALIDFLRGLVEFDPAKRWSPFQASKHPFVTGEPFMCPFKPPPETPCMPVAQNIKVDHHPGGGHWFAAGLS LNDPGRTRVSLHNSPHFQAVPYGHGASYGSVGSHGSYNDGIGLGSSYGSYGDGSNMFAYYSPVAPSGMNMHPQAGLSMLGNSPDARWRFIQYSHGNGLGM SPSAGNFAPLPLGTSPSQFTPPSSYCQASAGSPGHYGPTSPARSCSHGSPLGKMAAVTQFNRRKRWGYSGSSQSQESTSLSNWQGQSTDGACSNQAEGNP PVLGSLPAHWQSSWMQQQGGSGSTACPSAIQSIPGSFKPVANMKCPQSAGPIHDMPETNLSLPDPGDWDPNYSDELLLQEDGSDMSFLSSEFSNSMHLGS GDPMVGVGRSNRASNASSSSLNQRQNGPLHAFSHVDVGSPPSAHDFHAGYGRSISKPSYFTPHVSQNSPSRLGQRFSHGRLAVRGSEWNPIKVQPPSSSF SSGGQRSPGSSSLSNSMPWGRRANFNSIPSPSRGRKDLGRIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.019G043400 [exp]	0	1
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.014G156400 [exp]	2.23	0.7299	Pt-NFR1.2
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.013G075300 [exp]	3.00	0.6934
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	3.46	0.7116
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	7.07	0.6798	Pt-CUL1.3
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Potri.012G066300 [exp]	9.16	0.6881	ATDGK1.1
AT5G14720			Protein kinase superfamily pro...		Potri.001G349300 [exp]	13.41	0.6480
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Potri.019G080300 [exp]	20.49	0.6385
AT4G11670			Protein of unknown function (D...		Potri.001G108400 [exp]	25.92	0.6765
					Potri.010G220800 [exp]	30.59	0.6469
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Potri.010G028200 [exp]	31.30	0.6598

Compare expression of checked genes

Potri.019G043400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.