Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 545 / 0 HXXXD-type acyl-transferase family protein (.1) AT3G03480 500 / 1e-175 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 259 / 1e-81 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 252 / 4e-79 HXXXD-type acyl-transferase family protein (.1) AT3G48720 241 / 5e-75 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 209 / 2e-62 HXXXD-type acyl-transferase family protein (.1) AT5G57840 183 / 1e-52 HXXXD-type acyl-transferase family protein (.1) AT3G62160 181 / 4e-52 HXXXD-type acyl-transferase family protein (.1) AT1G03390 173 / 7e-49 HXXXD-type acyl-transferase family protein (.1) AT2G40230 172 / 1e-48 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074500 [exp] 844 / 0 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 780 / 0 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 751 / 0 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 646 / 0 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 641 / 0 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 546 / 0 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 533 / 0 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 516 / 0 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 515 / 0 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 699 / 0 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 586 / 0 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 548 / 0 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 528 / 0 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 507 / 3e-178 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 496 / 3e-174 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 423 / 2e-147 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 357 / 4e-122 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 286 / 5e-94 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 266 / 3e-84 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.019G043600.1 pacid=42773603 polypeptide=Potri.019G043600.1.p locus=Potri.019G043600 ID=Potri.019G043600.1.v4.1 annot-version=v4.1 ATGGCATCATCACCCGCCTCTCTGTTGTTCAAAGTTCACAGACGTGAACCAGAACTGATCAAGCCTGCCAAGCCCACCCCACATGAGTTCAAGCTCTTAT CTGACATCGATGACCAAGAAGGTCTTCGATTCCACATTCCAGTCATGCAATTTTATCGCAACAATCCCTCCATGCAAGGGAAAGACCCCGTCAAAATCAT TAGGGAGGCACTTGCCAAGACATTAGTGTTTTACTATCCATTTGCCGGTAGACTCAGGGAAGGGCCTAACCGCAAGCTCATGGTGGAATGTACCGGTGAG GGTATCTTGTTCATAGAAGCTGATGCCGATGTTACACTTGAGCAATTCGGTGATGCGCTTCAACCACCTTTCCCCTGCTTGGAGGAGCTCCTCTTTGATG TCCCTGGCTCTAGTGGGGTGTTGAACTGCCCTTTGTTGCTTATTCAGGTGACGCGCCTCAAGTGTGGTGGTTTTCTGTTTGCCCTCCGCCTGAACCATAC CATGAGTGATGCCGTAGGCCTAGTCCAATTCATGGCAGCAGTGGGTGAGATGGCACGGGGAGCCAATGCGCCCTCCGTCCCAGCTGTGTGGGAAAGACAA GTTCTCAATGCTAGTGACCCTCCACGAGTTACATGCACACACCGTGAGTACGAGGAGGTAGCTGACACCAAGGGTACCATTATTCCACTTGATGATATGG CTCATCGTTCCTTCTTCTTTGGCCCTTCAGAAATGTCTGCTCTTCGAAAATTTGTCCCGCCTCACCTTAGCCATTGTTCTACTTTCGAAATTCTAACAGC ATGTCTTTGGAAATGTCGTACCATTGCCCTCCAACCAGATCCTACCGAGGAGATGCGCATACTATGCATTGTCAATGCTCGTGAGAAATTTAACCCTCCA TTGCCAAGAGGATACTATGGTAATGGCTTTGCTTTTCCGGTAGCAGTGGCAACTGCAGGAGAACTCTCAAAAAATCCATTTGGATACGCCTTGGAATTGG TGAGAAAGGCTAAGGCTGACGTGACTGAGGAATACATGCGATCAGTATCATCTTTGATGGTGATTAAGGGGAGGCCTCACTTTACAGTGGTAAGGGCATA CCTAGTATCGGACCTGAGACGTGCAGGATTCGAAGAGGTAGATTTTGGATGGGGTAATGCTATATATGGTGGCGCTGCCAAAGGTGGGGTTGGCGCCATC CCTGGAGTTGCAAGCTTTTATATCCCATTTACAAACAAGAAAGGAGAAAATGGGGTTGTGGTCCCATTTTGCTTGCCGGCTCCTGCCATGGAAAGATTTG TCAAGGAGCTTGACGGCATGTTGAAGGACGACCAGACAGTTAGCTCGCAAACTAAGTCCAAATTTATTGTATCTTCCCTATAA
AA sequence Show only first row Show all	>Potri.019G043600.1 pacid=42773603 polypeptide=Potri.019G043600.1.p locus=Potri.019G043600 ID=Potri.019G043600.1.v4.1 annot-version=v4.1 MASSPASLLFKVHRREPELIKPAKPTPHEFKLLSDIDDQEGLRFHIPVMQFYRNNPSMQGKDPVKIIREALAKTLVFYYPFAGRLREGPNRKLMVECTGE GILFIEADADVTLEQFGDALQPPFPCLEELLFDVPGSSGVLNCPLLLIQVTRLKCGGFLFALRLNHTMSDAVGLVQFMAAVGEMARGANAPSVPAVWERQ VLNASDPPRVTCTHREYEEVADTKGTIIPLDDMAHRSFFFGPSEMSALRKFVPPHLSHCSTFEILTACLWKCRTIALQPDPTEEMRILCIVNAREKFNPP LPRGYYGNGFAFPVAVATAGELSKNPFGYALELVRKAKADVTEEYMRSVSSLMVIKGRPHFTVVRAYLVSDLRRAGFEEVDFGWGNAIYGGAAKGGVGAI PGVASFYIPFTNKKGENGVVVPFCLPAPAMERFVKELDGMLKDDQTVSSQTKSKFIVSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G043600 [exp]	0	1
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G098100 [exp]	4.47	0.9406
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221100 [exp]	8.88	0.9440
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G096300 [exp]	9.79	0.9319
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G095700 [exp]	12.00	0.9292
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.002G007100 [exp]	18.33	0.9375
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096200 [exp]	25.63	0.9383
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155866 [exp]	30.00	0.9340
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Potri.009G124800 [exp]	32.40	0.9253	GC1.1
					Potri.009G008300 [exp]	34.39	0.9302
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.004G088100 [exp]	44.09	0.9136

Compare expression of checked genes

Potri.019G043600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.