Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35930 1127 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16170 81 / 3e-15 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT5G36880 80 / 5e-15 ACS acetyl-CoA synthetase (.1.2) AT1G30520 72 / 1e-12 AAE14 acyl-activating enzyme 14 (.1) AT4G19010 72 / 2e-12 AMP-dependent synthetase and ligase family protein (.1) AT1G51680 69 / 1e-11 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT3G48990 68 / 3e-11 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 66 / 7e-11 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 66 / 1e-10 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 65 / 3e-10 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036900 [exp] 76 / 1e-13 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.005G248500 [exp] 76 / 1e-13 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 74 / 4e-13 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.001G055700 [exp] 73 / 7e-13 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.004G102000 [exp] 73 / 8e-13 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 72 / 1e-12 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.018G094200 [exp] 69 / 1e-11 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 68 / 3e-11 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.011G164100 [exp] 66 / 8e-11 AT1G30520 645 / 0.0 acyl-activating enzyme 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009528 [exp] 1226 / 0 AT5G35930 1051 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10020348 [exp] 609 / 0 AT5G35930 526 / 4e-172 AMP-dependent synthetase and ligase family protein (.1) Lus10036027 [exp] 81 / 1e-15 AT1G30520 436 / 3e-150 acyl-activating enzyme 14 (.1) Lus10012280 [exp] 77 / 7e-14 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 74 / 3e-13 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10041499 [exp] 74 / 7e-13 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10012595 [exp] 74 / 8e-13 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10005390 [exp] 67 / 5e-11 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10013831 [exp] 67 / 7e-11 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10024123 [exp] 66 / 9e-11 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G043800.1 pacid=42774236 polypeptide=Potri.019G043800.1.p locus=Potri.019G043800 ID=Potri.019G043800.1.v4.1 annot-version=v4.1 ATGAGACGTTGCAGTGGAAGCTCTAAAAGCCAAGAGAAGCAGCTGCAGCATCATCATAAGCATAAGCATTGCTGCTTATCACACCTCTTTCTTAAAGCAG CAGCTCAAAACCCCCCAAAAGTCGCTGTCATACATGCTGCACCATCTTCTTCTTCTTCTCCTGCTGCTGCTTCTAGTGGGCCCCAAACTCAAATCTCTAG AGAATTGATCACTTCTACTACTCCTCCAATTTATGAAGGCGACCAGTGTTTCACTTTCGCTAATGTGTTCAGCTCCGTTGATTCCCTCTCCTCTCGCCTC CGCTCCATTCTTGATGGTGCTGATGATCCTCACCTTATCAAACCCCAATCCCCTCCAGGTAAAGGCAGCAACAATCCTGGCAAGAATCAAGCTGAGACCG CGAGTGCATATAACCCAAAAATAGTGGGAATATATATGCCACCTTCAGTGGAATACATAATTTCTGTTTTCTCAATTTTGAGGTGTGGAGAAGCGTTCTT GCCTATTGATCCATCGTGGCCGAGAGATAGAGTATTGTCAATTGTTGCTTCAGCCAATGCGGCCCTTATTATTACTTCTCGATCGTCGTTTGGTAAAGGT GGTAATAAGGATATTAATGAAGCAGATTGGCTTGTGGATCGTAGTGGTTGTCGTGTCTTGTGTTTTTCGATGGAAGACAGCGAGTGTAGTGGTGGTCCGT CGGAGTTAGCTTGGCCTTGTGAAAATGAGAAAGAGAGATTGTTCTGTTATTTGATGTACACTTCTGGATCGACTGGGAAGCCTAAAGGCGTGTGTGGGAC TGAACAAGGCCTCTTAAATCGCTTTTGGTGGATGCAAGAATTGTATCCCCTACATGGAGAGGAAGCTCTATTGTTCAAAACATCGATAAGCTTTATCGAC CACCTGCAAGAATTTCTCAGTGCTATGCTTACTACATGTACACTGGTTATACCTCCTTTCCATGAGCTGAAAGAGTATCCATTTTCTCTTGTCAATGTTC TACAGGCCTACTCCATAAATAGACTTACAGCTGTCCCTTCACTTATGAGAGCAATCCTTCCTGTTTTGCAAAGGCAACATAGCATGCAGATTCAGACTTC ATTGAAATTGCTAGTACTGAGTGGTGAAGTTTTTTCTCTATCCTTATGGGATGCGCTTTCGACCTTACTACCTAGGACCACAATTTTGAATTTATATGGG ACTACCGAGGTATCTGGTGACTGTACATATTTTGATTGCAAGAGGTTGCCTGCGATTTTGGAGACAGAGGCACTAACAAGCATTCCAATTGGTTTGCCTA TTTCTAACTGTGATGTGGCACTAATTTGTGAATCCGATACATCTAATGAGGGAGAGATATATGTTGGTGGTCTCTGTGTTTCTAATGGTTACTATTCTGA GTCCACTGTTACATCCTTTATCTCTGCAAATCCACACATGGACAACATCTGTAATAGCTCTGTAGATAACTGGGGATGCCAAGCTTATTATAGAACTGGT GATTTTGCACAAAGGCTTCAGAATGGTGACTTGTTATTCTTAGGAAGAACAGATCGGACTGTAAAAATCAATGGTCAACGCATTGTTCTAGAGGAGATTG AAAATACACTCAGGGGACATCCTGATGTTGCTGATGCTGCTGTAATTTCTCGTGAAGGTCCAGGGGAGCTTTTGTTTCTTGATGCAATTTTGCTGTTCAA AGAGAGAGAAAAATCTGAGGATTTTTTTGTCAGGTCTTCAATAAGAAAGTGGATGGTCGACAAAGTTCCATTAGCAATGGTTCCTAATCGCTTTGTAATC ACAGAATCGTTGCCCATGTCTTCCACTGGAAAAGTTGATTATGCTTTATTGGCACGTTCAAAGTTTCTCAACTTGCATGTCCAAGATGAGATTGGCAATG CAACAAGTGATCTCCTGCAAATTATCAAAAAGGCATTTTGTGATGGTTTGATGGTTGAAGAAGTTTCTTGTGATGATGATTTCTTTGCAATGGGTGGTAA TTCCATTTCTGCAGCACATGTTTCTTATAATCTAGGGATCAATATGAGATTGCTTTATAACTTCCCTACTCCCTCTAAGCTTCATGCTGCTCTTCTAGAG AAAAAGGAATCTTACTGCATGGAAGTGAGAGTTGATGCTAATTCACAATTGAAGCCAAAAAAAGATAGCTTGGTTTCAGATATGGCTTATTCTCCTAATC CTACATCTCCTGTTGTTCCTGGTCTCAAATCAATGAAGCAGCCATCAAAAAACCCTCATCAAAATAATGATGATCATACTGTTGCATCTAAACGCTTCAA GGAAGATTTGGATATTAATATTTCTTCTGCATGTGTTAAGCCTAGTGATGGACAACCATTGTCTAGTTCAATATCAATGTTATGTTCATTCAGCCGGTGC AACACGGTTATCTATGATGAAAATTGCAGGTCACGAAAATCACATCAAATCAATCGGTTAGCAAAAGTTCCGAGAAATGGAAAAGGTTCTAGTATGCATG AATTATGGAAGGTTTATATGGAGTCTTGTGTAGATGCATCACCACTGGTTGTGGTTAAACAGCAGGATGTCTATCTCTTCATTGGATCTCATTCGCACAA ATTTGTTTGTGTTAATGCCCTAAGTGGTTCTATCCAGTGGGAAGTCAAGCTAGAGGGACGAATTGAAAGTTCTGCAGCAATTGTAGGCGACTTTTCTCAG GTTGTAGTTGGCTGCTACAGTGGGAAAATATATTTTCTTGATTTTCTTGATGGCAGCATTTGCTGGACTTTCCAAACATGTGGTGAGGTGAAGTGCCAGC CAGTTGTGGACATACACAGACAGTTAATCTGGTGTGGCTCTCATGACCATAATTTATATGCGCTTGACTACAGAAATCATTGCTGTATTTATAAGCTCTC ATGTGATGGGAGTATATATGGGTCTCCTGCAATTGACGAGGTGCACAACACTCTTTATGTGGCATCTACTAGTGGCCATGTGACAGCTATATCAATAAAG GCTTTGCCATTTAATACTTTATGGGAGCATGAGCTAAAGGTCCCAGTTTTTGGGTCACTTTCACTTTGTCCTTCAAGTGGAAATGTTATTTGTTGTTTAG TGGACGGGAACATTGTTGTATTGGATTTCTGTGGCTCCATCATTTGGAGGTGTGGAACTGGTGGTCCTGTTTTTGCTGGAGCCTGTATATCTTGCGTGCT TCCTTCTCAGGTTCTGATATGCTCTAGAAATGGACGTGTTTATTCATTTGAAATGGAAACAGGAGATTTACTTTGGGAGTATAATGTTGGAGATCCAATT ACTGCATCTGCATATGTTGACGAGCACTTGCAGCTGCTATCTGATCCCTGCCTTTTGTCAGACAGGTTGGTTTGTGTATGCACCAGTTCTGGACGTGTAC ATCTGCTTCAGATTAACTTGGATGATTCCGGAAAGCAAAATCAACCTGGTTTAAATATAGTTCAGGAATTTGCAAGGTTGGAGCTCCCCGGAGACATTTT CTCTTCACCTGTGATGATTGGTGGCAGGATTTTTGTTGGATGCCGGGATGATTATGTCCACTGCATTTCTGTTGAAGATCTAAGTTCGGTGTATGAAGGT GCTGGTTATTAA
AA sequence Show only first row Show all	>Potri.019G043800.1 pacid=42774236 polypeptide=Potri.019G043800.1.p locus=Potri.019G043800 ID=Potri.019G043800.1.v4.1 annot-version=v4.1 MRRCSGSSKSQEKQLQHHHKHKHCCLSHLFLKAAAQNPPKVAVIHAAPSSSSSPAAASSGPQTQISRELITSTTPPIYEGDQCFTFANVFSSVDSLSSRL RSILDGADDPHLIKPQSPPGKGSNNPGKNQAETASAYNPKIVGIYMPPSVEYIISVFSILRCGEAFLPIDPSWPRDRVLSIVASANAALIITSRSSFGKG GNKDINEADWLVDRSGCRVLCFSMEDSECSGGPSELAWPCENEKERLFCYLMYTSGSTGKPKGVCGTEQGLLNRFWWMQELYPLHGEEALLFKTSISFID HLQEFLSAMLTTCTLVIPPFHELKEYPFSLVNVLQAYSINRLTAVPSLMRAILPVLQRQHSMQIQTSLKLLVLSGEVFSLSLWDALSTLLPRTTILNLYG TTEVSGDCTYFDCKRLPAILETEALTSIPIGLPISNCDVALICESDTSNEGEIYVGGLCVSNGYYSESTVTSFISANPHMDNICNSSVDNWGCQAYYRTG DFAQRLQNGDLLFLGRTDRTVKINGQRIVLEEIENTLRGHPDVADAAVISREGPGELLFLDAILLFKEREKSEDFFVRSSIRKWMVDKVPLAMVPNRFVI TESLPMSSTGKVDYALLARSKFLNLHVQDEIGNATSDLLQIIKKAFCDGLMVEEVSCDDDFFAMGGNSISAAHVSYNLGINMRLLYNFPTPSKLHAALLE KKESYCMEVRVDANSQLKPKKDSLVSDMAYSPNPTSPVVPGLKSMKQPSKNPHQNNDDHTVASKRFKEDLDINISSACVKPSDGQPLSSSISMLCSFSRC NTVIYDENCRSRKSHQINRLAKVPRNGKGSSMHELWKVYMESCVDASPLVVVKQQDVYLFIGSHSHKFVCVNALSGSIQWEVKLEGRIESSAAIVGDFSQ VVVGCYSGKIYFLDFLDGSICWTFQTCGEVKCQPVVDIHRQLIWCGSHDHNLYALDYRNHCCIYKLSCDGSIYGSPAIDEVHNTLYVASTSGHVTAISIK ALPFNTLWEHELKVPVFGSLSLCPSSGNVICCLVDGNIVVLDFCGSIIWRCGTGGPVFAGACISCVLPSQVLICSRNGRVYSFEMETGDLLWEYNVGDPI TASAYVDEHLQLLSDPCLLSDRLVCVCTSSGRVHLLQINLDDSGKQNQPGLNIVQEFARLELPGDIFSSPVMIGGRIFVGCRDDYVHCISVEDLSSVYEG AGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	0	1
AT2G41080			Tetratricopeptide repeat (TPR)...		Potri.016G075000 [exp]	1.00	0.8717
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	4.00	0.8309
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Potri.010G106200 [exp]	4.24	0.7950	ATCPSF73.1
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	5.29	0.7915
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.005G179500 [exp]	5.65	0.7895	UBP26.2
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Potri.003G037000 [exp]	5.74	0.7576
AT2G14050		MCM9	minichromosome maintenance 9 (...		Potri.019G014403 [exp]	6.32	0.7393
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	7.41	0.7962
					Potri.003G044301 [exp]	9.38	0.8057
AT1G04140			Transducin family protein / WD...		Potri.014G193900 [exp]	10.29	0.7052

Compare expression of checked genes

Potri.019G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.