Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03550 222 / 6e-71 RING/U-box superfamily protein (.1) AT5G17600 216 / 1e-68 RING/U-box superfamily protein (.1) AT4G17905 184 / 1e-56 ATL4H RING/U-box superfamily protein (.1) AT1G72220 129 / 9e-35 RING/U-box superfamily protein (.1) AT4G33565 116 / 3e-30 RING/U-box superfamily protein (.1) AT5G10380 110 / 2e-28 ATRING1, RING1 RING/U-box superfamily protein (.1) AT1G04360 110 / 5e-28 RING/U-box superfamily protein (.1) AT5G43420 108 / 2e-27 RING/U-box superfamily protein (.1) AT2G20030 100 / 5e-24 RING/U-box superfamily protein (.1) AT4G28890 97 / 7e-23 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073500 [exp] 356 / 1e-123 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 225 / 6e-72 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 222 / 7e-71 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 142 / 7e-40 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 121 / 4e-32 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 120 / 9e-32 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 115 / 1e-29 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 113 / 8e-29 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 107 / 7e-27 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013618 [exp] 231 / 4e-75 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10015901 [exp] 128 / 8e-35 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10037264 [exp] 125 / 2e-33 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10012745 [exp] 119 / 1e-31 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10035677 [exp] 115 / 6e-30 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10012975 [exp] 100 / 3e-24 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 100 / 3e-24 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10032161 [exp] 96 / 2e-22 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10027736 [exp] 89 / 9e-22 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10029178 [exp] 93 / 2e-21 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.019G043900.1 pacid=42774485 polypeptide=Potri.019G043900.1.p locus=Potri.019G043900 ID=Potri.019G043900.1.v4.1 annot-version=v4.1 ATGGGTTCTACTGCTGACAACCAAAATCCTTGGTCACCATATAGCACCTATAAAGATTGTTCACAAGGAATTTGTAGCGTCTATTGTCCACAATGGTGTT ACATCATTTTCCCTCCTCCGCCTCCTTTGTCACTCGGTGATGATGCTTCTAATACTGATTTATCCCCTCTTACTATAGCATTTATCGGCATCCTGGCAAG TGCTTTCATCTTGGTAACTTACCACACTCTCGTTTCCAAGTACTGTAGTCGGCGAGGTCATGGCAATGATACCACTGAATTGAATGACAATCAAGATCAG ATGGGAAATGAAGCATCGCAAGGTATCCCAGGTGGACTAGATGAGGCAGTTTTAAAGTCTATCACAATTTGCAAGTACAAGAAAGGTGATGGTTTCGTTG AAGGCACAGATTGCTCAGTCTGTCTTGGTGAATTTCAAGAAAACGAGAGCTTAAGGCGTTTGCCAAAGTGCAGCCATGCATTTCATCTCCTTTGCATTGA TACATGGCTCAAATCTCATGCAAGTTGTCCTCTATGCCGTGCCAATATTGCTGATCCCGCTAATGTTTTGCCTAGTGCTCAAGCACCACCAGCTGTGCCG GTCCAAGAAAATCTGCCAAGCTCTAATGCTTCAACACTTCAATACCAACAAAGGACCAGTGATGCTGTTTTAGTGATTCAAGATTTAGAAGGGAGTGTTG GGCAAGAGGGTAGTGATGATCTACACCCAGGACTCCAGTTAATCAAGATCTTGAAAGTATTATGGAAGCAAATGATCCGATCCAACCAATTAGAAGGTCA GTTTCACTGA
AA sequence Show only first row Show all	>Potri.019G043900.1 pacid=42774485 polypeptide=Potri.019G043900.1.p locus=Potri.019G043900 ID=Potri.019G043900.1.v4.1 annot-version=v4.1 MGSTADNQNPWSPYSTYKDCSQGICSVYCPQWCYIIFPPPPPLSLGDDASNTDLSPLTIAFIGILASAFILVTYHTLVSKYCSRRGHGNDTTELNDNQDQ MGNEASQGIPGGLDEAVLKSITICKYKKGDGFVEGTDCSVCLGEFQENESLRRLPKCSHAFHLLCIDTWLKSHASCPLCRANIADPANVLPSAQAPPAVP VQENLPSSNASTLQYQQRTSDAVLVIQDLEGSVGQEGSDDLHPGLQLIKILKVLWKQMIRSNQLEGQFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03550			RING/U-box superfamily protein...		Potri.019G043900 [exp]	0	1
AT4G35830		ACO1	aconitase 1 (.1.2)		Potri.015G130201 [exp]	4.47	0.8727
AT1G69430			unknown protein		Potri.006G159000 [exp]	5.09	0.8882
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.014G115300 [exp]	5.29	0.8501
AT4G08460			Protein of unknown function (D...		Potri.005G172300 [exp]	6.48	0.8805
AT4G30993			Calcineurin-like metallo-phosp...		Potri.018G110300 [exp]	10.90	0.8476
AT1G69430			unknown protein		Potri.006G155900 [exp]	12.48	0.8737
AT1G78520			Carbohydrate-binding X8 domain...		Potri.011G099600 [exp]	14.14	0.8133
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	15.55	0.8522
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.017G057500 [exp]	15.87	0.8636
AT1G67410			Exostosin family protein (.1)		Potri.010G227901 [exp]	18.16	0.8364

Compare expression of checked genes

Potri.019G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.