Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31350 278 / 1e-90 KUF1 KAR-UP F-box 1 (.1) AT1G55270 69 / 1e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 57 / 6e-09 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27150 52 / 3e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 50 / 2e-06 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 46 / 3e-05 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61350 45 / 6e-05 SKIP4 SKP1 interacting partner 4 (.1) AT4G39590 44 / 0.0001 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G21950 42 / 0.0004 SKIP6 SKP1 interacting partner 6 (.1) AT4G39550 42 / 0.0004 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G024000 [exp] 368 / 6e-126 AT1G31350 330 / 1e-110 KAR-UP F-box 1 (.1) Potri.001G230600 [exp] 327 / 6e-110 AT1G31350 352 / 2e-119 KAR-UP F-box 1 (.1) Potri.003G217700 [exp] 74 / 2e-14 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.018G007100 [exp] 71 / 2e-13 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 67 / 4e-12 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G081100 [exp] 50 / 1e-06 AT2G21950 390 / 3e-135 SKP1 interacting partner 6 (.1) Potri.002G091900 [exp] 49 / 3e-06 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G004500 [exp] 49 / 4e-06 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 45 / 4e-05 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033288 [exp] 277 / 4e-90 AT1G31350 362 / 3e-123 KAR-UP F-box 1 (.1) Lus10034748 [exp] 144 / 7e-42 AT1G31350 169 / 2e-51 KAR-UP F-box 1 (.1) Lus10019425 [exp] 77 / 5e-15 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 71 / 4e-13 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 47 / 1e-05 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10013899 [exp] 47 / 2e-05 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 46 / 4e-05 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037196 [exp] 44 / 0.0002 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028121 [exp] 43 / 0.0003 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 43 / 0.0003 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF13964 [poplar] [flax] Kelch_6 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.019G044000.1 pacid=42773165 polypeptide=Potri.019G044000.1.p locus=Potri.019G044000 ID=Potri.019G044000.1.v4.1 annot-version=v4.1 ATGAAATCCTTCCCGAATAATAAGAAAACCAGGAAGAATGAGCTCCCTGATACTCTCAATGAAACGTTGTTGCCAGGCCTACCCGACCACCTTTCTCAAA ACTGTCTCACTTCTCTCCCACCTTCCATTCTTTTCTCTGTATCACATGCATGGCGGCGACTTCTCTATTCTTCATTATTCGCCCCATTCTTCTCCCTTTA CGCCCTTCTCTCTGCATCATCATCGTATCCTACCACAAAAGACAATCAAGTGGATATAATCAGGTCAATTGAGCTCATGTCATTTGACCCTATATCATCA TTATGGCGATCAGTCCCTAGTATTCCAAAAGATCCCCCACTCCACCTCCTCCACCGCCACCCATCTTTTTTATCAAGAAAGCTCTCAGTACAATCCCTAA CAGTCTCTAACCATCTTGTTCTTATATCTGGCACCACTCACCAGTTTGTCCCAGCACTGTCTAGGCCATTAGTCTTCCATCCAGAGTCTAAGAAGTGGTT CTTTGGTCCTCCGTTCACTAGCCCTCGGCGTTGGTGTGCCACTGGTTCTGTGCATGGAAGGGTTTATGTGGCGAGTGGGGTTGGTCCACGGTACAGTGGA GAAGTAGCTAGATCAATGGAACAATGGGACTTCAGGCAACAAGGTAACCATTGGAGATGGGAAAACATGGCACCGCTGAAAGATGGTAGGTTTAGCAGGG AACCTATTGGGGCAATAGGATACAAAGGCAAGCTTTACATGGTCAACGTTAAAGGCAATGCACCGAAAGAAGGTTTGGTTTATGATGTAGAAGAAAACCA ATGGAATGATATGCCTAGAGGGATGCTAGCTGGATGGAATGGACCAGCAGCTACAATGAATGAAGATGCTATCTATGTGGTGAATGAAGTAACAGGAGCT TTGAGTGAGTATGATTGTAAAAATGATTGTTGGAAGAAGGTCATTGAATTGCCAGAGCTTAAACTCGCTGAGCAGATCGCCGCAGGAAGAGGGAGAGTTT GTGTGGTTTGCGCGAATGGGGAGACGATTGTTGTGGTGGATGTGATGGCGAGGCCTGCACGGTTTTGGGTGGTGGAGCCACCGCAGGGACAGCAAGTAGC TGGACTGCATATATTGCCCAGGATGAGTGGCAGCTACTAG
AA sequence Show only first row Show all	>Potri.019G044000.1 pacid=42773165 polypeptide=Potri.019G044000.1.p locus=Potri.019G044000 ID=Potri.019G044000.1.v4.1 annot-version=v4.1 MKSFPNNKKTRKNELPDTLNETLLPGLPDHLSQNCLTSLPPSILFSVSHAWRRLLYSSLFAPFFSLYALLSASSSYPTTKDNQVDIIRSIELMSFDPISS LWRSVPSIPKDPPLHLLHRHPSFLSRKLSVQSLTVSNHLVLISGTTHQFVPALSRPLVFHPESKKWFFGPPFTSPRRWCATGSVHGRVYVASGVGPRYSG EVARSMEQWDFRQQGNHWRWENMAPLKDGRFSREPIGAIGYKGKLYMVNVKGNAPKEGLVYDVEENQWNDMPRGMLAGWNGPAATMNEDAIYVVNEVTGA LSEYDCKNDCWKKVIELPELKLAEQIAAGRGRVCVVCANGETIVVVDVMARPARFWVVEPPQGQQVAGLHILPRMSGSY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.019G044000 [exp]	0	1
AT5G15180			Peroxidase superfamily protein...		Potri.007G122351 [exp]	6.85	0.9566
					Potri.013G070350 [exp]	8.12	0.9548
AT1G80120			Protein of unknown function (D...		Potri.016G143500 [exp]	9.79	0.9401
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.003G156200 [exp]	10.95	0.9473
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176100 [exp]	13.74	0.9504	2OGox3
AT3G58060			Cation efflux family protein (...		Potri.001G010300 [exp]	15.68	0.8434
AT5G19890			Peroxidase superfamily protein...		Potri.003G214500 [exp]	17.23	0.9434	PRX1.10
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006200 [exp]	22.29	0.9456
AT5G15180			Peroxidase superfamily protein...		Potri.007G122401 [exp]	27.00	0.9452
AT5G15180			Peroxidase superfamily protein...		Potri.007G122250 [exp]	28.63	0.9446

Compare expression of checked genes

Potri.019G044000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.