Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17620 468 / 3e-166 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G072300 [exp] 521 / 0 AT5G17620 582 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013643 [exp] 472 / 3e-167 AT5G17620 558 / 0.0 unknown protein Lus10001340 [exp] 412 / 4e-144 AT5G17620 469 / 9e-168 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06694 [poplar] [flax] Plant_NMP1 Plant nuclear matrix protein 1 (NMP1)
Representative CDS sequence Show only first row Show all	>Potri.019G044100.2 pacid=42774033 polypeptide=Potri.019G044100.2.p locus=Potri.019G044100 ID=Potri.019G044100.2.v4.1 annot-version=v4.1 ATGCTCCCGCTCAGTTTCTTCTTTTCGCTGGCATGGAACGTTATGCTCTTCTCGAATGGCTCTTCTTCAAGTACCCCATTTCCCCTTATTATCATCATCA TGTTCTTTGTCATTTTTTTTCTTTTTCTGGGAAAATTGAACCAAATGTATTGTGATTTCCTTTCCTTTCCTTTTCTTTTTTTTCCAACTTCTCTTTGTTG CCGGCTTGTTTGGTTACTGGGAAAATGCGGGTCAAGGAGAAAATTAATTTGGGAGATTTGCCTTGTTACTTCTTTGATGATGTTATTGGGTGATAAATCG CCATTCTCGCAGCTAAATCTACAACGGGATACTATGGATCGTGGCGAAGAGACTGCTCGTATCCAATATCTGGCAGAGATTGCAAAGTTTCTGGGCATCA CTTCAACTTTAGACACAGAAGTCATCCAAGGGCAAGGAAGCTATGAAGACAGAACTGAAATGCTTCGCCTAATAGTAGATCTCGTGGAGGCTAGCAGATA TGCTGATAATCTAGAATGGAGTGTAGATGAACAGGTGGCAAAAGACATACAACTCGTAGATTCTATTGCAGAGAAACAAGCTCTAATTTTCTCAGAGGAG TGCAAGCTGTTCCCTGCTGATGTGCAGATTCAATCCATATATCCATTACCAGATGTATCTGAGTTGGAGACAAAGCTTGCAGAACAGTCAAAAATACTTC TGAATCTTCAGCAGAAAGTTGATGATTTGGCATCTAAGCATGCATACAATCCAGACGAGGAGTATGCTGAGGTGGAATCCCAACTCCAGGCACATTTGGA ATCTTTTCTGGAAATTGCAAGGTCATTCAATGTCATATACACTAAGGAAATACGCCCTTGGACACACATGATGGAAGTGCCACAACTTCATGGGTTTGGA CCCGCTGCCAACCGGTTGTTGGAGGCATACAAGATGCTTTGGAAGTTCCTAGGGAATTTAAGAAATCTTAGAGACTCACATTCAGCTCTTGCTGTTGGGT CATCTGAAACAAAAGCTGCTCCTGTTCCAAGAATAATTTCAGAGTGTGAGTCTGCTTTGACATTCTTAAATCGTGATCTTGGCATTCTCTCAGCTTCTAT TGTACGTGAGCAAGGTGACAATGTCAGTTTATGA
AA sequence Show only first row Show all	>Potri.019G044100.2 pacid=42774033 polypeptide=Potri.019G044100.2.p locus=Potri.019G044100 ID=Potri.019G044100.2.v4.1 annot-version=v4.1 MLPLSFFFSLAWNVMLFSNGSSSSTPFPLIIIIMFFVIFFLFLGKLNQMYCDFLSFPFLFFPTSLCCRLVWLLGKCGSRRKLIWEICLVTSLMMLLGDKS PFSQLNLQRDTMDRGEETARIQYLAEIAKFLGITSTLDTEVIQGQGSYEDRTEMLRLIVDLVEASRYADNLEWSVDEQVAKDIQLVDSIAEKQALIFSEE CKLFPADVQIQSIYPLPDVSELETKLAEQSKILLNLQQKVDDLASKHAYNPDEEYAEVESQLQAHLESFLEIARSFNVIYTKEIRPWTHMMEVPQLHGFG PAANRLLEAYKMLWKFLGNLRNLRDSHSALAVGSSETKAAPVPRIISECESALTFLNRDLGILSASIVREQGDNVSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17620			unknown protein		Potri.019G044100 [exp]	0	1
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G023200 [exp]	10.39	0.8267
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.008G072901 [exp]	11.09	0.8412
AT3G15160			unknown protein		Potri.011G135800 [exp]	14.86	0.7944
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.003G095300 [exp]	16.09	0.8185	SYP23.1
					Potri.008G113500 [exp]	18.00	0.8201
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Potri.002G136500 [exp]	18.02	0.8000	CRK.2
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G013700 [exp]	20.00	0.7884
AT3G60910			S-adenosyl-L-methionine-depend...		Potri.009G055600 [exp]	24.37	0.7562
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Potri.006G116500 [exp]	25.29	0.7965
AT4G37608			unknown protein		Potri.009G004400 [exp]	26.15	0.7935

Compare expression of checked genes

Potri.019G044100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.