Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08540 588 / 0 ATSIG1, SIG1, SIGA, SIG2, SIGB, ABC1, ATSIG2 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) AT2G36990 227 / 7e-67 SIG6, SIGF, ATSIG6, SOLDAT8 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) AT3G53920 201 / 7e-57 SIG3, SIGC SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1) AT5G13730 183 / 7e-52 SIGD, SIG4 sigma factor 4 (.1) AT1G64860 163 / 8e-44 SIGB, SIG2, SIG1, RPOD1, SIGA RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) AT5G24120 143 / 1e-36 ATSIG5, SIG5, SIGE SIGMA FACTOR 5, sigma factor E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070500 [exp] 864 / 0 AT1G08540 558 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.006G125700 [exp] 235 / 5e-70 AT2G36990 615 / 0.0 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) Potri.006G234400 [exp] 198 / 3e-56 AT3G53920 417 / 5e-140 SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1) Potri.009G057200 [exp] 169 / 9e-47 AT5G13730 303 / 2e-99 sigma factor 4 (.1) Potri.019G043300 [exp] 160 / 9e-43 AT1G64860 679 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.013G075400 [exp] 154 / 1e-40 AT1G64860 680 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.012G031100 [exp] 136 / 4e-34 AT5G24120 584 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Potri.015G022100 [exp] 133 / 4e-33 AT5G24120 605 / 0.0 SIGMA FACTOR 5, sigma factor E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020325 [exp] 493 / 4e-169 AT1G08540 534 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10013642 [exp] 473 / 9e-162 AT1G08540 498 / 4e-172 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10001339 [exp] 441 / 3e-149 AT1G08540 520 / 1e-180 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10005668 [exp] 398 / 4e-133 AT1G08540 425 / 2e-143 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10009541 [exp] 139 / 2e-34 AT1G64860 438 / 2e-147 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Lus10038823 [exp] 139 / 2e-34 AT5G24120 547 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Lus10020365 [exp] 107 / 9e-25 AT1G64860 346 / 7e-115 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Lus10014934 [exp] 72 / 5e-14 AT5G24120 250 / 1e-80 SIGMA FACTOR 5, sigma factor E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF04539 [poplar] [flax] Sigma70_r3 Sigma-70 region 3 CL0123 [poplar] [flax] HTH PF04542 [poplar] [flax] Sigma70_r2 Sigma-70 region 2 CL0123 [poplar] [flax] HTH PF04545 [poplar] [flax] Sigma70_r4 Sigma-70, region 4
Representative CDS sequence Show only first row Show all	>Potri.019G044200.1 pacid=42774124 polypeptide=Potri.019G044200.1.p locus=Potri.019G044200 ID=Potri.019G044200.1.v4.1 annot-version=v4.1 ATGTCTTGTTTACTGCCACAGTTCAAGTGCCAACCAGACTCTTTCTCTATTCAGTTTAGAAATCTCCAACATCACAGCACCAACCATATCCAGCTCTCAA AGAATGGGGAGCCATTTTGTTTCCGAGCACAATGCGCTTTGTCTTCTGCATCACCATCAACATCAACTGCTGTGCTCAATCTGGAGAAGTTGAGATTGCC TTCTTTAGAATCTCATTCTGATTCAATTGCTGCAAACAGGCCGTGGACATATATAGGGGGGATTGGTCCACCCAAAGAGCCACTCTTTGGAACTAGTTTA GCCACTGAAACACTTATTATAAATGATGAGGCTGTAATTGCTGCAGCTGCTGCTGAAGCAGTTGCTCTTGCAAGAGCTGCTGTCAAGGTTGCGAAAGATG CAGCTGAAATGGCCAAAAATTACTGTTCTGTGAATACAGAAACTAAAATTCCAATTGCATCCACAGCAGATTCCTTTTCTTCAATGTGGTCTCTGCTTAC TGGAAAAGAACGAGCTGATATAATTGGAGTTTCCTTCTCAGCTGAAACTGGACTAAGAGAAGAATGTTCGACTCAATACCCTACCGAAGAATCTGATTGT TTCGGACCAACACATGAAGAACTTGCACTTTTGGAGAAACAGCTTTCTGAGAGTATAGTTGTGCGATCAAAGCGCCAAACACAGAGAAAAGCTAAACGTG CAAGAGCAGCCGAAAAGGCTGCTGCAAATTTTGTGTTCATGAAGTCCGGTTCTGCTTGCAAGAAAAAGCGTGTGCCCGTGCAAGAGGTAGACCAGTCTGA TCCGTTGCGTTTTTTTAGAGGAGCTAGCACCTCTTCCAGGCTTCTCAGTGCTACCGAAGAAGTGGAGTTGTCAGAAGGAATACAGGACCTACTAAAACTT GAAAGGATCGAGGAGGAGCTTAAGGAGCGATTTGGAGGCAAGCCCACCTTTGCACAATGGGCTGCTGCAGCTAGAGTTGATCAGATAACTTTGAGGAAGC GCTTAAACTATGCTATCCTTTGCAAAGACAAAATGATAAAATCCAACATTCGGCTTGTTATTTCAATTGCCAAAAATTATCAGGGAGCTGGGATGAATCT CCAAGATCTTGTTCAGGAAGGATGTCGAGGCCTAGTACGTGGTGTAGAGAAGTTTGATGCATCAAAAGGTTTCAAATTCTCAACATATGCTCACTGGTGG ATTAGACAGGCAGTACGCAGGTCTCTCTCTGATCAATCTAGGACAATTCGCTTACCTTTTCACATGGTGGACGCAACTTATAGAGTGAAGGAGGCTAGAA AACAATTTTATAGTGAAAATGGAAGACATCCTGATGATAAAGAAGTTGCAGAGGCAACTGGGCTCTCGATGAAGAGGCTCAGTGCTGTACTACTAACTCC AAAAGCCCCAAGATCTCTTGACCAGAAGATGGGGTTTAACATGGATCTTAAACTTTCGGAAGTAACTGCGGATCCCGAAGCAGAAACAGCAGAAGATCTG CTAATGAAGGAATTTATGAAAAAGGACCTGGAGAGGGTTCTGGAAAGTCTCAGTCCAAGGGAGAATCAGGTCATCAGATGGAGATTTGGTATGGAGGACG GAAGGATGAAAACATTGCAGGAGATTGGGGAGTTGATGGGTGTCAGCAGAGAAAGAATCCGGCAAATTGAGCTGAGCGCATTTCGAAAGCTAAAGAACAA GAATAGAACCAAACAGTTGAGGCAGTATTTGGTTTCATAA
AA sequence Show only first row Show all	>Potri.019G044200.1 pacid=42774124 polypeptide=Potri.019G044200.1.p locus=Potri.019G044200 ID=Potri.019G044200.1.v4.1 annot-version=v4.1 MSCLLPQFKCQPDSFSIQFRNLQHHSTNHIQLSKNGEPFCFRAQCALSSASPSTSTAVLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSL ATETLIINDEAVIAAAAAEAVALARAAVKVAKDAAEMAKNYCSVNTETKIPIASTADSFSSMWSLLTGKERADIIGVSFSAETGLREECSTQYPTEESDC FGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARAAEKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKL ERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWW IRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDL LMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.019G044200 [exp]	0	1
AT4G38160		PDE191	pigment defective 191, Mitocho...		Potri.004G209400 [exp]	1.73	0.9609
AT1G33780			Protein of unknown function (D...		Potri.019G073000 [exp]	4.12	0.9418
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Potri.005G082400 [exp]	5.09	0.9476
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Potri.002G100300 [exp]	5.47	0.9598
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.018G081800 [exp]	7.14	0.9545
AT5G53080			Tetratricopeptide repeat (TPR)...		Potri.015G010800 [exp]	12.64	0.9544
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	12.96	0.9544
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Potri.006G147300 [exp]	17.74	0.9526
AT2G31890		ATRAP	RAP (.1)		Potri.017G001600 [exp]	18.49	0.9537
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	19.59	0.9432

Compare expression of checked genes

Potri.019G044200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.