Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17690 269 / 1e-84 AtLHP1, LHP1, TFL2 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070400 [exp] 616 / 0 AT5G17690 259 / 4e-82 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005669 [exp] 263 / 8e-83 AT5G17690 237 / 5e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10020324 [exp] 240 / 1e-73 AT5G17690 223 / 3e-68 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10013641 [exp] 152 / 1e-40 AT5G17690 253 / 6e-80 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10001338 [exp] 146 / 4e-38 AT5G17690 240 / 3e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00385 [poplar] [flax] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Potri.019G044400.1 pacid=42774138 polypeptide=Potri.019G044400.1.p locus=Potri.019G044400 ID=Potri.019G044400.1.v4.1 annot-version=v4.1 ATGCTGAACGGATTTGGGCAGAAATTACCATCCCTAAACCCCAGAGTCTCAAGTGTCAGGAGTTACCAAGTTTTGTTGACAGGTCTGGTATCCATCTCTG TCTCTCTCACACGCACACATTTGGTGTTGGTACGTGTGGTAGGTCTAGGACTCTGCCATCTTTCCACTGCAGTATATATTTATTTAATTGTATACATAAA CACAGACAACCAAACCCAAACTCCAAAACAAAAGAAAATCACATTTCTTCCCTCCAAAAAGAATCAAACTTTTTTGAATACGATGAAGGGAAAGAGGAAG GCAACTGCAAATCCAGTGTTGACTGATGCTGCAGAGGGCAGTAGTAGCAACTTATTTGAGACCCAAGTGAGGGAAGGGAATGTTGATGAAGAGGAGGAGA GAATTTGGGCTTATAATGGGGAGAATCGAGAGGAAACCGAAGGAGAAGAAGAAGAAGATGATGATGATGAAGAAGAAGAAGAAGAGGAAGAGGACTCCAA AGGAGAACAAGAGAGAGACAATTTATTTGATGAAGAAAGGACAAAACTTGATGAGGGTTTCTTCGAAATCGAGGCTATTCGTCGAAAACGAGTTCGTAAG GGTCAGTTGCAGTATCTTATTAAATGGCGAGGATGGCCTGAAACAGCCAACACCTGGGAGCCTCTGGAGAATTTGCAGTCATGTGCTGATGTCATTGATG CATTTGAAGAGAGCTTGCAATCTGGCAAATCTTTCCGAAAACGGAAACGCAAGCATGGGGGTCCTCATACTCAGTCAAAGAAGAAGCAATCACGTTCCTC TACTTCCTACAATGTATTGGATGTTGAAATAAGTATTGCGGATAAACATCTCCCTTCTGCTCCTCTTAGTAGCTCATTGCTTGGTGATCTACCTTCACCC CTTCAATTCATCAGCTCAGATCCTGGAGGAGAGAGTAATGGAGAAGCGAACAATGTCAAAACATTCAAGCAAATCGATGAGAATGGATCCATGAATGGTT CAAAGCATATTTTTCCAAGGAAAGAGGATAATGAATATGATCCAAAGCTTAGCGAACTTAGAGGAACAATTCCTAACATTGATGTAAACACGAATAATCT CGCAATACATTTCCATGAAGAAAAGACTTTAGAAGGTAATGGTCTGGCAAATGGGCTTCCCAAGGTTGATTATGATCCTGTTCAGAACAGTCAACGCACA GGTGCTAGGAAAAGAAAGTCTGGTTCTGTGAAGAGGTTCAAAAAGGACTCTGTCAAGCCAGCTTTTTTACATAATTCATCTGCAAATTTCTCAGTTGGCT CTACTGGTGGAGTTGCACAACTAGGGATTGAAAATCCTAGCTTAACTTGGGGTAATTCAAGTCACATGCCCACGGCAGAAAATACCATTAATGCATTAGC TATCACCAAGATCCTCAAGCCTACAGGCTTTTCAGCTTCTGTGTCTGACAATGTCCAGGATGTGCTTATAACCTTTCGCGCGTTAAGGTCTGATGGACAA GAAGTAACAGTGGATAACAGGTTTCTCAAGGCTAATAATCCACATCTGTTAATCAACTTTTATGAGCAACATCTCAAATACAGTACATGA
AA sequence Show only first row Show all	>Potri.019G044400.1 pacid=42774138 polypeptide=Potri.019G044400.1.p locus=Potri.019G044400 ID=Potri.019G044400.1.v4.1 annot-version=v4.1 MLNGFGQKLPSLNPRVSSVRSYQVLLTGLVSISVSLTRTHLVLVRVVGLGLCHLSTAVYIYLIVYINTDNQTQTPKQKKITFLPSKKNQTFLNTMKGKRK ATANPVLTDAAEGSSSNLFETQVREGNVDEEEERIWAYNGENREETEGEEEEDDDDEEEEEEEEDSKGEQERDNLFDEERTKLDEGFFEIEAIRRKRVRK GQLQYLIKWRGWPETANTWEPLENLQSCADVIDAFEESLQSGKSFRKRKRKHGGPHTQSKKKQSRSSTSYNVLDVEISIADKHLPSAPLSSSLLGDLPSP LQFISSDPGGESNGEANNVKTFKQIDENGSMNGSKHIFPRKEDNEYDPKLSELRGTIPNIDVNTNNLAIHFHEEKTLEGNGLANGLPKVDYDPVQNSQRT GARKRKSGSVKRFKKDSVKPAFLHNSSANFSVGSTGGVAQLGIENPSLTWGNSSHMPTAENTINALAITKILKPTGFSASVSDNVQDVLITFRALRSDGQ EVTVDNRFLKANNPHLLINFYEQHLKYST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Potri.019G044400 [exp]	0	1
					Potri.008G224328 [exp]	12.64	0.7330
AT5G03670			unknown protein		Potri.006G115300 [exp]	15.96	0.7059
AT1G71910			unknown protein		Potri.013G114000 [exp]	28.37	0.6832
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.001G300200 [exp]	31.81	0.6990
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.011G136102 [exp]	32.40	0.6880
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G441801 [exp]	39.57	0.6511
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Potri.010G052200 [exp]	44.15	0.6573	CIP4.1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051300 [exp]	47.56	0.6438
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.017G133200 [exp]	54.47	0.6268
AT3G43610			Spc97 / Spc98 family of spindl...		Potri.009G153300 [exp]	70.55	0.6500

Compare expression of checked genes

Potri.019G044400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.