Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17910 296 / 1e-82 unknown protein AT2G29620 102 / 8e-22 unknown protein AT1G07330 96 / 9e-20 unknown protein AT5G58880 72 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068800 [exp] 1301 / 0 AT5G17910 437 / 3e-129 unknown protein Potri.001G249000 [exp] 92 / 1e-18 AT5G17910 134 / 2e-31 unknown protein Potri.009G043000 [exp] 91 / 4e-18 AT2G29620 169 / 6e-43 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009543 [exp] 171 / 8e-45 AT2G29620 249 / 1e-71 unknown protein Lus10020367 [exp] 167 / 3e-44 AT5G17910 250 / 2e-73 unknown protein Lus10001202 [exp] 101 / 2e-21 AT2G29620 144 / 6e-35 unknown protein Lus10005869 [exp] 100 / 8e-21 AT5G58880 144 / 6e-35 unknown protein Lus10020368 [exp] 77 / 7e-14 ND 43 / 0.001 Lus10009544 [exp] 76 / 2e-13 AT5G17910 43 / 0.001 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G044500.2 pacid=42774480 polypeptide=Potri.019G044500.2.p locus=Potri.019G044500 ID=Potri.019G044500.2.v4.1 annot-version=v4.1 ATGGTTGTGATAGGAGAAGGACAGGGAGAGAGAGAGAGAGCGAGAATGGGTATTGATGCAATGAAAATTAGAGTTCAAATTAGGAAATTTTCGGTGATTT TATTTAGATTATGTTATAGATCAGTTTGTAAACACCCTTTTCTTGTGGGCATGGTTTGTTACTTGTTATTGTTGTATAGTTCATTTCCTGTCTTGTTTTC CCTTTTAGTCTCTGCATCCCCTGTTTTGATTTGTACTGCAATTTTGCTTGGGACCCTTTTGTGTTTTGGGGAGCCAAATGCTCCTGATATTGAAACGGAA AAGGAAGAAGAAGAAGTTAGCCATGAGATTTTGTCTTTGAAAAAGGAAGGGGTTGTAGAGGATGCCACTTTTGTTGTTCAGAAAGATGAGAGCTTTAGAT TAGAGAGATATGTAGGGAACATAGACATTGAAAAAGAGAGCTTGGTAGAGAGCAACAATAAAATGATTGAGGGTCATGGTTATTTAGGAGATTATGTGCC GCTGATTTATGAAACTTTGTGGGAAGTTCAATTTGAGAAGCAAGTTATTGAGGAAGTGAAGAGTGATTTTGATAATTTAGAGTCAGGAAAGAAGAGGGAA ATTCAAGAGGAGAATCTTGAGATCATGGAAGGGACAAGTCATGAGGAGGGCACTGAGGATCAATATTCTTTGCTCCAAAACTTTAGAGATGAGAACCTTG AAGATAATTCAGCGGTAGAGTTTAATGAAACTCAAAATGGTTACTTAGAATTTTCGCAGGAATCATCTTGGAAACCTGCAAATCATGATGATGAAGAAGA TGATGATGAGGCTTCTGATTTTGGATCTGATGGGGCGGAAAATTCCTCTCCAGATGCTTCAATGGCAGACATTCTTCTAATGCTTGATGAGCTTAACCCA CTTTTAGATGAGGAAGCTCCTCGACCAGCTCATATATCTCATGATGGATCTGATGCTGGTTCAGAGGGGTCTCATAAGAGTGATGAGAGGAGTATTGAGT CAGAGGAGGATGTGGAAAACCAGGCAGATGAGGATGAAGATGGCGATGATGATAATGATAACAAAGAAGAAGCACAGGGAAGTAAAGAGGATGAAAGTAA ATCTGCTATCAAATGGACAGAGGATGACCAGAAAAATCTCATGGATTTGGGGACTTTAGAACTTGAAAGAAATCTGCGTTTGGAGAGTCTTATTTCAAGG AGAAGGGCTTGCAGAAACATGAGATTGATGGCTGAGAAGAATCTTATAGACTTGGATGCTGCTGATCTTCCCATTAATGTTCCATCCATTTCAACAGCTA GGCAGAACCCATTTGATTTTCCTTACAATGATGTTCCTGGGTCCGCTCCATCTGTATTGTTGCCAAGACAAAATCCTTTTGACCTTCCCTACAACTCACA TGAGGAAAAGCCTGATCTTAAGGGGGATAGTTTTCAACAGGGATTCTCAACAATTCAGCATAGGGAATCATTTTTTCGAAGGCCTGAAAGTTTCAGTGTC AGGCCATCAACTTTGGGGGGTGCCTGGCAAGAGAGGCAAGACCTTCAGTGGAAGCCTTATTTTGTTCCTGAACGATTTACTACTGAAGGAACTAGTTATC ACACTTTCCAGCAGCAATTAAGTGAGGCTAGCGACTCAAAGGTGAGCTCAGTTCCAGATAGCGAGTCTATTAGTTCAGCTCTGGAGGAGGAGGACAAGAG GATCAATGAAGTAGATGTTTCTCATGAAACAGAAATGATTTCCAATGTTGACCATGCCTCTCTCCTTGTTGAACCAGGAAGTTTATCATCTGAAGAGGTT GATTCTGTGGATGATGAACAGGTTGGGGAGGGTGATTTTCACCTTGATGGGGCTGAAATCACACCAGGGGTCTTTGAAAACCATCATGAAGTAGATTCTG GCTTGTCGGAATCAGAAGGGGCAACTCCTAAGGAGCTTAACCCAAGTGAAATTCTTCTGCGTATGGGACCTGGTGAGGAGGATTACAGCAGTAGATCAAG CCTATCCTCATTGTCAGAGATAGATGAAAAAATATCTGATGTGAAAAGAGGATCAATGTGTCTTGAGCCAGCAAACTTTCAGATTGAGGGTTCTCACATT TCAACCCAAACTTCACTTGATTCTGATTTTCATTTTGTGAGTGGGTTGGCAGATGATAATGAATACAGGGAGCCTATTTTGGAGTCCAGAAATGATCATA TTGACGAATGTGACATCTCAACACAATCTTCTCTTGATTCAGATTTTCATTTTACAAGTCGGATGATGGATGAAAGTTCACATAGGGAGCCTGCTGTGGA GTCAACAGGCTATCAAATTGCGGATTCTGGTATTTTGAAGGAAAGTTCACCAGAGTTTGATTTATATGTAATGAGTGGACTGGCAGATGACAATCAAGAA CATGTTTTGGAGCCAAGAGGCCATCATATTGTGGAATCTGGCATTTCATCAGAGACTTCTCATAATTCAGATTTCCATTTGACAACTGCAGTGGTGGATG ACGGTCAACATAGTGATACCGTTTATGATTCAAGCCCCCCATCAATTGAGACTTTTCTCTCTTTTTCCTCTCTTTCTTCTGACACACACAGATCAGAAAT GGGTTCACCTCTGGCAATGGTTGAAGATAAAGAATCTGAAGCACATATTGAGAGCTTGGAGAAGGGTGCTTCTGGTTACAAAGAGATGCTTGAAGGCTCT TCACAAGAACAATTACCAGATGAAAGTGAAATAGGATCAGGAGTTGTAGAAAATACTGGGGATGAGATTACAGAGCTTGGGCTGTCTGGAGTGGATTCAA ATTTTTATGGTCAAAATGGGGTCATGAAGCCTGAATCAGCTGTTGAGAATGTTTCTGTTGATTCTCCTGCATCTTTGTCAGACGATGGATCAGCAGAGGA GGTTGTAGCCTATAAGGAAGAAAGCTCTCATCACAAACAGGATCAACTGCACTCATTGAGTCTTGTTACAGAAATCGTTGTTGATGGGAATAAGCCGCTG GATTCTGCCTATTCTAGTTATAAGATGACTTCCGAAGAGTGCAATTTGCCTGTACTGGAAAAAGATTATCCTCCACTGGTAGTTGAGCAGGTTTCAGCAG ACACTGAATTATCTGCTTCAGAGGCTAAACCTGTCAAGGACCATGGACTTATTACTGAAAAAAGTCTTGGGCTTGAGCAGGATCAAGTCTTAGAACACTA TAATTACCCAGGAGAAACATGTGGCCCCCCCATTTATGAGGATAATGTGAACGAAGAGGAAGATGAGATGAAGGAGATTGATGAAGAATTGTTGTCAGAA TTGGATACAGTTGGGGACTTTAGTGTAAAAGAAGTTGTTGGCGAGTCACTCCATGACGAACAAGTACCTGAAAATACTAGTGTTAGTCCTGAATTTAGTT TCTTGCCAAAAAATTCAAGCCAGACGGAGGTCAAGCCAGAGCTTCCAGTCCTTGAAGTTAGATCAGTTGAAGATATTGACTTGGCTTTCAAGCAACTTCA TGAAGGAGTAAATGTTGAGGAGGTCATCCTTCCAAGTATGGTTGAGGAGCAGTTAGCTGAGGATGAACATAAACTTCAAACTAATTCAGATTTGTGA
AA sequence Show only first row Show all	>Potri.019G044500.2 pacid=42774480 polypeptide=Potri.019G044500.2.p locus=Potri.019G044500 ID=Potri.019G044500.2.v4.1 annot-version=v4.1 MVVIGEGQGERERARMGIDAMKIRVQIRKFSVILFRLCYRSVCKHPFLVGMVCYLLLLYSSFPVLFSLLVSASPVLICTAILLGTLLCFGEPNAPDIETE KEEEEVSHEILSLKKEGVVEDATFVVQKDESFRLERYVGNIDIEKESLVESNNKMIEGHGYLGDYVPLIYETLWEVQFEKQVIEEVKSDFDNLESGKKRE IQEENLEIMEGTSHEEGTEDQYSLLQNFRDENLEDNSAVEFNETQNGYLEFSQESSWKPANHDDEEDDDEASDFGSDGAENSSPDASMADILLMLDELNP LLDEEAPRPAHISHDGSDAGSEGSHKSDERSIESEEDVENQADEDEDGDDDNDNKEEAQGSKEDESKSAIKWTEDDQKNLMDLGTLELERNLRLESLISR RRACRNMRLMAEKNLIDLDAADLPINVPSISTARQNPFDFPYNDVPGSAPSVLLPRQNPFDLPYNSHEEKPDLKGDSFQQGFSTIQHRESFFRRPESFSV RPSTLGGAWQERQDLQWKPYFVPERFTTEGTSYHTFQQQLSEASDSKVSSVPDSESISSALEEEDKRINEVDVSHETEMISNVDHASLLVEPGSLSSEEV DSVDDEQVGEGDFHLDGAEITPGVFENHHEVDSGLSESEGATPKELNPSEILLRMGPGEEDYSSRSSLSSLSEIDEKISDVKRGSMCLEPANFQIEGSHI STQTSLDSDFHFVSGLADDNEYREPILESRNDHIDECDISTQSSLDSDFHFTSRMMDESSHREPAVESTGYQIADSGILKESSPEFDLYVMSGLADDNQE HVLEPRGHHIVESGISSETSHNSDFHLTTAVVDDGQHSDTVYDSSPPSIETFLSFSSLSSDTHRSEMGSPLAMVEDKESEAHIESLEKGASGYKEMLEGS SQEQLPDESEIGSGVVENTGDEITELGLSGVDSNFYGQNGVMKPESAVENVSVDSPASLSDDGSAEEVVAYKEESSHHKQDQLHSLSLVTEIVVDGNKPL DSAYSSYKMTSEECNLPVLEKDYPPLVVEQVSADTELSASEAKPVKDHGLITEKSLGLEQDQVLEHYNYPGETCGPPIYEDNVNEEEDEMKEIDEELLSE LDTVGDFSVKEVVGESLHDEQVPENTSVSPEFSFLPKNSSQTEVKPELPVLEVRSVEDIDLAFKQLHEGVNVEEVILPSMVEEQLAEDEHKLQTNSDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17910			unknown protein		Potri.019G044500 [exp]	0	1
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.008G081200 [exp]	2.00	0.8835
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129100 [exp]	2.00	0.8953
					Potri.010G242200 [exp]	2.44	0.8760
AT4G39420			unknown protein		Potri.005G086100 [exp]	3.46	0.8862
					Potri.005G067901 [exp]	3.87	0.8833
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.005G029000 [exp]	4.24	0.8695
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.002G239100 [exp]	4.58	0.8476
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Potri.003G039475 [exp]	4.69	0.8862
AT3G53270			Small nuclear RNA activating c...		Potri.004G126720 [exp]	6.00	0.8539
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	6.32	0.8701

Compare expression of checked genes

Potri.019G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.