Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 342 / 7e-112 ATTPS21 terpene synthase 21 (.1.2) AT3G14490 302 / 8e-96 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 297 / 6e-94 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 288 / 1e-90 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 283 / 1e-88 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 275 / 2e-85 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 268 / 1e-82 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 265 / 1e-81 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G48110 264 / 1e-81 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 263 / 5e-81 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G045300 [exp] 901 / 0 AT5G23960 416 / 3e-140 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 860 / 0 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 803 / 0 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 800 / 0 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 759 / 0 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 759 / 0 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016400 [exp] 730 / 0 AT5G23960 436 / 5e-148 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 718 / 0 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.019G016122 [exp] 709 / 0 AT5G23960 426 / 7e-144 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031590 [exp] 283 / 3e-89 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10040043 [exp] 272 / 1e-84 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10042202 [exp] 262 / 6e-81 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10008614 [exp] 256 / 9e-79 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10031589 [exp] 251 / 4e-76 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10042204 [exp] 246 / 6e-75 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10002660 [exp] 245 / 1e-74 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10008611 [exp] 242 / 6e-73 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10014724 [exp] 239 / 3e-72 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10012312 [exp] 198 / 2e-56 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G044900.2 pacid=42774141 polypeptide=Potri.019G044850.1.p locus=Potri.019G044900 ID=Potri.019G044900.2.v4.1 annot-version=v4.1 ATGGAAACCCAAGCACATTTAACAGCAAACAGTAATCGCCAAAACAATTCTCGTCCAGAGGCAAATTTCCCACCAAGCTTGTGGGGTTGTAGCTTCGCTT CATTTTCCTTCCCACAAACGGAATTCGAGCGGTACACCAGACAAGTAGACGTGTTGAAGGAAAATGTGAAGGACATGCTGATGGCATCCAAAAAGGATAC AGTGGAACATATTGAATTCATTAATCTGTTATGTCGGCTTGGTGTGTCATATCATTTTGACGACGAGATTGAAAACAGCCTGAAAGAAATTTTTGATGAC CTTCCTCATCTTCTTGAGAAGCATGACTTTGATCTCTACACTCTGTCACTTACTATTTCGAGTATTGAGACAGCATGGATTCAAAATGCCTTGTGTTTTC ACAAAGGCAAACCTGGCGTCTTCGGCTATGCAATCAAGCCCACGTTAGCAGACCATATTAGGAATGCTTTGATCCGGCCCTTTCGCAAAGGCGTACCAAG AATAGAGGCTAGAAAATACATCTCTTTCTACGAAGAAGATGAGTCTCGCATGGACACTCTACTCAAGTTTGCCAAGATAGATTTCAATCGAGTTCAGTTA CTGCATCGACAAGAGCTATCCATTCTCTCGAGGTGGTGGAATGATTTAAATTTTTCTGAGGAGTTTCCATATGCAAGAGATAGAATTGTAGAGATCTATT TCTGGGCAAATGCAATCCATTTCGAGCCTCAATATGCTTTCTCGCGGATGGTGGTCACGAAATATACAAAATTTGTATCACTGCTAGATGATACATATGA TGCATATGCATCTTTTGAAGAGATACAACATTTTACTAATGCAATTGAAAGATGCTGCATGGATGCCATCGATCAACTACCTGCCGAGTACTTGAAAGTT CTTTACAGAGCTCTTCTGAATCTTTTCAGTGAAACTGAGAGTGATATGGGAAAAGCAAGGACGATCCTATGCCTCATATTACGTGAAGGAGGCAGCTACC GAGTGGAGGCGCAGTGGGCAGATGAAGGCCATGTCCCAACATTTGATGAGTATGTGCGCAATGGATTAACCACAAGTGCTTATGGGGTAATTACGGCAGT ATCCTTCGTTGAAATGGATGAAGTTGCAGGACAGGAGGAGTATGAATGGCTAAAAAGTAATCCAAAAATTATGAAAGCTGGAAAGATGATCTGTCGTTTA ATGAATGACATAGTGGGCCATGAGGATGAACAAAAGAGGGGAGACTGTGCATCCGGTGTTGAATGCTACATGAAACAATATGATGCATCGGAGAAGAAAG CAATTGAAGAGATACAAAATATGGTCGCAAATGGATGGAAGGACATCAATGAAGATTGCATGAGGCCAACTAATGCTCCAATGCTTCTCCTTCAACATAT TGTTAACCTTGTTCGAGTTACCGATGTCATGTATGGGGACGATGACGACGCCTACACAATCCCACTTAAGTTTAAAAGACTATGTCACTTTATTATATGT TGA
AA sequence Show only first row Show all	>Potri.019G044900.2 pacid=42774141 polypeptide=Potri.019G044850.1.p locus=Potri.019G044900 ID=Potri.019G044900.2.v4.1 annot-version=v4.1 METQAHLTANSNRQNNSRPEANFPPSLWGCSFASFSFPQTEFERYTRQVDVLKENVKDMLMASKKDTVEHIEFINLLCRLGVSYHFDDEIENSLKEIFDD LPHLLEKHDFDLYTLSLTISSIETAWIQNALCFHKGKPGVFGYAIKPTLADHIRNALIRPFRKGVPRIEARKYISFYEEDESRMDTLLKFAKIDFNRVQL LHRQELSILSRWWNDLNFSEEFPYARDRIVEIYFWANAIHFEPQYAFSRMVVTKYTKFVSLLDDTYDAYASFEEIQHFTNAIERCCMDAIDQLPAEYLKV LYRALLNLFSETESDMGKARTILCLILREGGSYRVEAQWADEGHVPTFDEYVRNGLTTSAYGVITAVSFVEMDEVAGQEEYEWLKSNPKIMKAGKMICRL MNDIVGHEDEQKRGDCASGVECYMKQYDASEKKAIEEIQNMVANGWKDINEDCMRPTNAPMLLLQHIVNLVRVTDVMYGDDDDAYTIPLKFKRLCHFIIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G044900 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G045300 [exp]	1.41	0.9980
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016116 [exp]	2.44	0.8780
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G045100 [exp]	3.00	0.9968
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.013G010150 [exp]	3.46	0.9355
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G045400 [exp]	4.12	0.8344
AT5G53420			CCT motif family protein (.1.2...		Potri.015G014000 [exp]	6.32	0.8564
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.006G033500 [exp]	9.16	0.8447
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.019G018600 [exp]	9.79	0.8113
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.007G050000 [exp]	13.26	0.8557
AT2G15180			Zinc knuckle (CCHC-type) famil...		Potri.001G006850 [exp]	16.91	0.8450

Compare expression of checked genes

Potri.019G044900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.