Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 368 / 7e-123 ATTPS21 terpene synthase 21 (.1.2) AT3G14490 325 / 1e-105 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 319 / 3e-103 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 312 / 2e-100 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 309 / 3e-99 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 305 / 6e-98 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 303 / 3e-97 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29110 298 / 1e-95 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 299 / 2e-95 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 289 / 1e-91 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G045100 [exp] 822 / 0 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 800 / 0 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 781 / 0 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 775 / 0 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 767 / 0 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 762 / 0 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G016122 [exp] 746 / 0 AT5G23960 426 / 7e-144 terpene synthase 21 (.1.2) Potri.019G045300 [exp] 728 / 0 AT5G23960 416 / 3e-140 terpene synthase 21 (.1.2) Potri.019G016400 [exp] 706 / 0 AT5G23960 436 / 5e-148 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031590 [exp] 347 / 2e-114 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10002660 [exp] 311 / 1e-100 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10031589 [exp] 310 / 7e-100 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10040043 [exp] 301 / 1e-96 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10008611 [exp] 296 / 1e-94 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042204 [exp] 289 / 4e-92 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10014724 [exp] 276 / 7e-87 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10008614 [exp] 271 / 2e-85 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10042202 [exp] 251 / 1e-77 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10006356 [exp] 244 / 5e-74 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G045400.2 pacid=42774146 polypeptide=Potri.019G045400.2.p locus=Potri.019G045400 ID=Potri.019G045400.2.v4.1 annot-version=v4.1 ATGACTAGAACAGTAAAATTATTCTTTCATGAATCAGTTGTGTTCGACAAGTTCAAGGACACCAATGGAGAGTTTAAGAAAACAATCATCAACGATGTTA AAGGCATCCTGAGCTTGTATGAAGCTTCGTTTTTAAGTGTGCATGGTGAACAGATACTGGATGATGCCCTAGTTTTCACAAAGGCAAACCTGGAGTCTTC GGCTATGCAATCAAGCCCACGTCTAGCAGACCATATTAGGAATGCTTTGATCCGGCCCTTTCACAAAGGCGTACCAAGAATAGAGGCTAGAAAATACATC TCTTTCTACGAAGAAGAGGAGTCTCGGAATGACACTCTACTCAAGTTTGCCAAGATAGATTTCAATCGAGTTCAGTTAATACATCGACAAGAGCTATCCA TTCTCTCGAGGTGGTGGAATGATTTAAATTTTGCTGAGGAGTTTCCATATGCAAGAGATAGAATTGTAGAGATCTATTTCTGGGCAAATGGAGTCCATTT CGAGCCTCAATATGCTTTCTCGCGGATGGTGGTCACGAAATATACAAAAATTGTATCACTGTTAGATGATACATGTGATGCATATGCATCTTTCGAAGAA ATACAACATTTTACTAATGCAATTGAAAGATGCTGCATGGATGCCATCGATCAACTACCTGCCGAGTACTTGAAAGTTCTTTACAGAGCTCTTCTGAATC TTTTCAGTGAAACTGAGAGTGATATGGGAAAACAAGGACGATCCTATGCCTTATATTACGTGAAGGAGGCATTCAAAGAATTGGCGAGAGCCTACCGAGT GGAGGCGCAGCGGGCAGATGAAGGCCATGTCCCCACATTTGATGAGTATGTGCGCAATGGATTAACCACAAGTGCTTATGGGGTAATTACGGCAGTATCC TTCGTTGGAATGGATGAAGTTGCAGGACAGGAGGAGTATAAATGGCTAAAAAGTAATCCAAAAATTATGAAAGCTGGAAAGATGATTTGTCGTTTAGTGA ATGACATAGTGGGCCATGAGGATGAGCAGAAGAGGGGAGACTGTGCATCCGGTGTTGAATGCTTCATGAAACAATATGATGTCTCGGAAAAGAAAGCAAT CGAAGAGATACAAAAGATGGTCGCAAATGGATGGAAGGACATCAATGAAGATTGCATGATGCCAACTAATGCCCCAATGCTTCTCCTTCAACATATTGTT AACCTTGTTCGAGTTACCGAGGTTACGTATGGGCATAATGACGACGCCTACACAATCCCACTAAGTTTAAAAGATTCTGTCACTTTATTATATGTTGAGC AAGTGCCTATGTGTGAATAA
AA sequence Show only first row Show all	>Potri.019G045400.2 pacid=42774146 polypeptide=Potri.019G045400.2.p locus=Potri.019G045400 ID=Potri.019G045400.2.v4.1 annot-version=v4.1 MTRTVKLFFHESVVFDKFKDTNGEFKKTIINDVKGILSLYEASFLSVHGEQILDDALVFTKANLESSAMQSSPRLADHIRNALIRPFHKGVPRIEARKYI SFYEEEESRNDTLLKFAKIDFNRVQLIHRQELSILSRWWNDLNFAEEFPYARDRIVEIYFWANGVHFEPQYAFSRMVVTKYTKIVSLLDDTCDAYASFEE IQHFTNAIERCCMDAIDQLPAEYLKVLYRALLNLFSETESDMGKQGRSYALYYVKEAFKELARAYRVEAQRADEGHVPTFDEYVRNGLTTSAYGVITAVS FVGMDEVAGQEEYKWLKSNPKIMKAGKMICRLVNDIVGHEDEQKRGDCASGVECFMKQYDVSEKKAIEEIQKMVANGWKDINEDCMMPTNAPMLLLQHIV NLVRVTEVTYGHNDDAYTIPLSLKDSVTLLYVEQVPMCE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G045400 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G044900 [exp]	4.12	0.8344
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016116 [exp]	4.24	0.8180
AT1G74470			Pyridine nucleotide-disulphide...		Potri.004G195800 [exp]	4.89	0.7220
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G045300 [exp]	7.07	0.8223
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G045100 [exp]	13.22	0.8063
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.001G019000 [exp]	20.92	0.7598
					Potri.008G103700 [exp]	24.49	0.7336
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.019G014409 [exp]	25.29	0.6965
AT5G53420			CCT motif family protein (.1.2...		Potri.015G014000 [exp]	26.83	0.7322
AT2G23210			UDP-Glycosyltransferase superf...		Potri.009G095550 [exp]	28.39	0.7215

Compare expression of checked genes

Potri.019G045400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.