Plant FIBer expression Database

Potri.019G045600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G045600.3 pacid=42773292 polypeptide=Potri.019G045600.3.p locus=Potri.019G045600 ID=Potri.019G045600.3.v4.1 annot-version=v4.1
ATGGTCCTCTTAGCCTTAATCTGGTTCGATCCTGCCCAACTTCTGCTAAGGCAGGTCTGGGTTTGCTGGGCGCCGCTTCCGACTCTGTTGCCCAAGAACA
ACTATTGGTTGAGGTCTGCTCTAATGATGACTCTAGTGAGAATGAACGGCTTGATTTCTCTGGATCGGATTATAGCCTTGACTCCGGTCATAGCACTCCC
CCAGCTTCTAGTAGTGGAAGGCGATCCCCTGACTCCAACCCATGTGGGGCTCTGCTTTCTTCAGCTACTCCTTCGATTGTCACTCCCATTCACACTGAAG
CTGGCTCCACCCCCGTTACTGGAACAAATGTTTGCAAGGACAGTGGAGCTCCTCCAGTTTCCTCTCCTGGTATCCCCCCAGGTTCGTTTGCTGCCCTTTC
TTCAGCTGCTGCTGGGTTTGCCACTCCCTGGTGTTGGGGTGGCTATTGTTGCTGCTATATGCGGCCTGATGTGTTGTGCTATTTGA
AA sequence
>Potri.019G045600.3 pacid=42773292 polypeptide=Potri.019G045600.3.p locus=Potri.019G045600 ID=Potri.019G045600.3.v4.1 annot-version=v4.1
MVLLALIWFDPAQLLLRQVWVCWAPLPTLLPKNNYWLRSALMMTLVRMNGLISLDRIIALTPVIALPQLLVVEGDPLTPTHVGLCFLQLLLRLSLPFTLK
LAPPPLLEQMFARTVELLQFPLLVSPQVRLLPFLQLLLGLPLPGVGVAIVAAICGLMCCAI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G045600
[exp]
0 1
AT4G32605 Mitochondrial glycoprotein fam... Potri.008G015600
[exp]
1.73 0.9534
AT4G20030 RNA-binding (RRM/RBD/RNP motif... Potri.003G074900
[exp]
3.46 0.9502
Potri.013G028950
[exp]
3.60 0.9269
AT4G29120 6-phosphogluconate dehydrogena... Potri.018G088000
[exp]
3.74 0.9249
AT5G64380 Inositol monophosphatase famil... Potri.017G042900
[exp]
6.92 0.9348
AT1G26880 Ribosomal protein L34e superfa... Potri.012G108301
[exp]
7.34 0.9330
AT4G14430 PEC12, IBR10, E... DELTA\(3\), DELTA\(2\)-ENOYL C... Potri.008G164900
[exp]
8.88 0.8949
AT3G56330 N2,N2-dimethylguanosine tRNA m... Potri.013G093500
[exp]
9.64 0.9360
AT4G35470 PIRL4, DREB1C plant intracellular ras group-... Potri.001G144100
[exp]
9.89 0.8905
AT2G20000 CDC27b, HBT HOBBIT, CDC27 family protein ... Potri.017G065600
[exp]
10.58 0.9328

Potri.019G045600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.