Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 496 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 392 / 1e-121 transmembrane receptors;ATP binding (.1.2) AT5G17680 378 / 6e-117 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 338 / 2e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18360 330 / 9e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 332 / 1e-99 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G11170 325 / 8e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 326 / 9e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 325 / 9e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 322 / 6e-97 disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 1080 / 0 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 1068 / 0 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 1065 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 1063 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 1055 / 0 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 1048 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 1038 / 0 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 1023 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 1006 / 0 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039850 [exp] 474 / 1e-153 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 455 / 2e-145 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 446 / 3e-143 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10030839 [exp] 433 / 4e-138 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011741 [exp] 425 / 3e-135 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 421 / 2e-134 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 409 / 7e-129 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 404 / 2e-127 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 403 / 7e-127 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 398 / 2e-123 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain
Representative CDS sequence Show only first row Show all	>Potri.019G046000.2 pacid=42774447 polypeptide=Potri.019G046000.2.p locus=Potri.019G046000 ID=Potri.019G046000.2.v4.1 annot-version=v4.1 ATGGATTCAATAAATATGAGCTCGCAAATCAAGATTCTTACAAATCCAAATTATTACGCTAGACGAGCTGCCATGACAGAGCCAGAGTCTTCTCGATGTA GACCAGAAGGGGCCTATGATGTCTTCTTGAGTTTTAGAGGAGAAGATACTCGCAAGACATTTACAGATCATCTATATACTGCCTTAGTCCAAGCAGGAAT CCACACTTTTCGAGATGATGATGAACTTAGTAGAGGAGAAGAAATCTCGAAGCATCTCCTCAGGGCAATTCAAGAATCAAAGATATCTATAGTGGTCTTC TCAAAAGGATATGCTTCTTCTAGATGGTGTCTCAATGAACTTGTAGAGATTCTTAAGTGCAAAAATAGAAAAACCGACCAGATTGTTCTTCCTATATTCT ATGACATTGATCCTTCAGATGTGAGAAAACAGAATGGCAGTTTTGCAGAAGCATTTGTTAAACATGAAGAGCGTTTTGAAGAGAAGTTGGTGAAGGAGTG GAGAAAAGCTCTTGAAGAGTCTGGAAATCTATCTGGATGGAATCACAATGATATGGCAAATGGGCATGAAGCAAAATTTATCAAAGAGGTTGTCAAGGAT GTATTGAATAAATTAGATCCCAAGTACTTATATGTTCCTGAGCGCCTAGTAGGTATGGATCGGCTTGCTCACAATATTTTTGACTTTCTAAGTACTGCAA CAGATGATGTACGCATTGTGGGCATACATGGGATGCCAGGAATAGGAAAGACGACTATAGCAAAAGTTGTATTTAATCAACTCTGCTATGGATTCGAGGG AAGCTGTTTTCTTTCGAATATCAATGAAACATCAAAACAATTTAATGGTCCGGCTCCTTTACAAAAGCAACTTCTTCATGATATTTTAAAACAAGATGCT GCGAATATCAATTGTGATGATAGAGGAAAAGTTCTGATCAAAGAACGACTTCGTCGCAAAAGAGTTCTTGTTGTTGCTGATGATGTGGCTTATCTGGACC AGCTAAATGCTTTGATGGGAGAGCGAAGTTGGTTTGGTCCCGGAAGTAGAGTAATTATTACAACAAGAGATTCAAATCTTCTTCGTGAAGCAGATCAAAC ATATCGGATCAAAGAATTGACACGAGATGAGTCCCTTCGGCTTTTCAGCTGGCATGCCTTCAAGGACACCAAGCCAGCAGAAGATTATATTGAGCTTTCG AAGGATGCAGTTGATTACTGTGGAGGACTTCCTTTAGCTCTTGAGGTTATGGGTGCTTGTCTGTCTGGGAAAAACAGAGATGGTTGGAAATGTGTAATTG ACAAATTAAGAAGAATTCCAAACCATGATATTCAAGGAAAGCTTAGAATAAGTTTTGACGCACTGGACGGTGAAGAACTACAAAATGCTTTCCTTGATAT CGCTTGCTTCTTTATTGATAGAAAGAAAGAGTACGTCGCAAAAGTGCTAGGAGCCCGTTGCGGTTACAATCCAGAAGTTGATTTGGAAACTCTCCGTGAA AGGTCTCTGATTAAAGTATTGGGAGGGACGGTAACCATGCATGATCTATTACGAGACATGGGAAGGGAGGTCGTTCGTGAATCGTCTCCAAAAGAACCTG GAAAGAGGACCAGAATTTGGAATCAAGAGGATGCATGGAATGTACTTGACCACCAGAAGGGTACGGATGTTGTAGAGGGTCTTGCACTGGATGTCAGAGC ATCAGAAGCTAAATCACTTAGCGCAGGATCATTTGCAAAAATGAAATGTTTAAATTTACTCCAAATCAAAGGAGCACATCTCACCGGATCCTTCAAACTG CTTTCTAAAGAGTTGATGTGGATTTGTTGGCTTCAATGTCCTTTGAAATATTTTCCATCTGATTTTTTACCTTGGATAATCTAG
AA sequence Show only first row Show all	>Potri.019G046000.2 pacid=42774447 polypeptide=Potri.019G046000.2.p locus=Potri.019G046000 ID=Potri.019G046000.2.v4.1 annot-version=v4.1 MDSINMSSQIKILTNPNYYARRAAMTEPESSRCRPEGAYDVFLSFRGEDTRKTFTDHLYTALVQAGIHTFRDDDELSRGEEISKHLLRAIQESKISIVVF SKGYASSRWCLNELVEILKCKNRKTDQIVLPIFYDIDPSDVRKQNGSFAEAFVKHEERFEEKLVKEWRKALEESGNLSGWNHNDMANGHEAKFIKEVVKD VLNKLDPKYLYVPERLVGMDRLAHNIFDFLSTATDDVRIVGIHGMPGIGKTTIAKVVFNQLCYGFEGSCFLSNINETSKQFNGPAPLQKQLLHDILKQDA ANINCDDRGKVLIKERLRRKRVLVVADDVAYLDQLNALMGERSWFGPGSRVIITTRDSNLLREADQTYRIKELTRDESLRLFSWHAFKDTKPAEDYIELS KDAVDYCGGLPLALEVMGACLSGKNRDGWKCVIDKLRRIPNHDIQGKLRISFDALDGEELQNAFLDIACFFIDRKKEYVAKVLGARCGYNPEVDLETLRE RSLIKVLGGTVTMHDLLRDMGREVVRESSPKEPGKRTRIWNQEDAWNVLDHQKGTDVVEGLALDVRASEAKSLSAGSFAKMKCLNLLQIKGAHLTGSFKL LSKELMWICWLQCPLKYFPSDFLPWII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G046000 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.019G052000 [exp]	1.00	0.9549
AT5G36930			Disease resistance protein (TI...		Potri.019G018396 [exp]	3.46	0.9144
AT5G36930			Disease resistance protein (TI...		Potri.019G016425 [exp]	3.46	0.9120
AT5G36930			Disease resistance protein (TI...		Potri.019G017082 [exp]	8.71	0.9089
AT5G36930			Disease resistance protein (TI...		Potri.019G021681 [exp]	10.24	0.9074
AT5G36930			Disease resistance protein (TI...		Potri.019G021024 [exp]	11.22	0.9073
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015300 [exp]	13.74	0.8771
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200500 [exp]	18.43	0.8748
AT5G50780			Histidine kinase-, DNA gyrase ...		Potri.012G102800 [exp]	19.41	0.8310
AT1G13750			Purple acid phosphatases super...		Potri.008G096000 [exp]	20.19	0.8251

Compare expression of checked genes

Potri.019G046000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.