Plant FIBer expression Database

Potri.019G046400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03250 318 / 8e-111 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012370
[exp]
332 / 5e-116 AT1G03250 318 / 2e-110 unknown protein
Lus10028017
[exp]
327 / 7e-111 AT1G03250 316 / 1e-106 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13902 R3H-assoc R3H-associated N-terminal domain
Representative CDS sequence
>Potri.019G046400.1 pacid=42774689 polypeptide=Potri.019G046400.1.p locus=Potri.019G046400 ID=Potri.019G046400.1.v4.1 annot-version=v4.1
ATGGCGACTCTTGAGGTTCTTCAGATGGTTGAAGAAGGTCTCCTTTCATCTCCTCCAAAAGCTGAAAATGAAAAACCCCGAGATTTGTCCATCGAGAAGA
AGATCGATTTCCTTGAGAGCTTGACTGGCAAAGTTAGCAACCGTCGATCTCGGAGATGGTTAAATGATCGATTGCTGATGGAGCTTGTGCCTCGTTTAGA
TGCAGAAGAAATTAGAGGCTTGTTTGCTCCACCACCTTGGGGTGATGATGTACCACTGTCACCATTTTGCATGACTAATATGGGAGAGTGGGACAAGTTT
AGGAATATAGACATGGACAAGCAGGCTAATATTATTGACAGACTAAATAGGAGGTCTGTCAAAAGGGAAGGTCGTGTTGATGCTGATAAGATGGCTGTCT
TGAATGCATGGCATAGAATAGATTGCCGAACTAGAGATGCACTTCGTCGTAGCTTCCTTGTAGAACTTATTGAGAGCTATGAGGCATGCATCCGGGTTTT
CATTCAAGATGGTGGAGATGAAGTTCTATCATTACGGGTCCAAGATCCCTTTCATAGATTGTTGCTGCATGGCGTCTGTGAGTTCTACAACTTGGCCTCA
GTGACTGAGACAGAATCAAAGGATGCAGAGTCATTTAAGACGACAAAAATAAAGAAGAAGAAAATGGCTGTAGTTGAGCTCCCGAATATCACTCTTTCCA
ATTTTTTGAGAATGTCCAAGGAAGGTGTATGGTAG
AA sequence
>Potri.019G046400.1 pacid=42774689 polypeptide=Potri.019G046400.1.p locus=Potri.019G046400 ID=Potri.019G046400.1.v4.1 annot-version=v4.1
MATLEVLQMVEEGLLSSPPKAENEKPRDLSIEKKIDFLESLTGKVSNRRSRRWLNDRLLMELVPRLDAEEIRGLFAPPPWGDDVPLSPFCMTNMGEWDKF
RNIDMDKQANIIDRLNRRSVKREGRVDADKMAVLNAWHRIDCRTRDALRRSFLVELIESYEACIRVFIQDGGDEVLSLRVQDPFHRLLLHGVCEFYNLAS
VTETESKDAESFKTTKIKKKKMAVVELPNITLSNFLRMSKEGVW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03250 unknown protein Potri.019G046400
[exp]
0 1
AT1G51200 A20/AN1-like zinc finger famil... Potri.016G051700
[exp]
2.44 0.7844
AT3G06170 Serinc-domain containing serin... Potri.008G201900
[exp]
3.00 0.7518
AT1G31812 ACBP6, ACBP acyl-CoA-binding protein 6 (.1... Potri.001G130200
[exp]
3.74 0.7714
AT1G30540 Actin-like ATPase superfamily ... Potri.001G466900
[exp]
4.89 0.7111
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Potri.006G126700
[exp]
5.65 0.7387
AT1G22790 unknown protein Potri.005G196300
[exp]
5.74 0.6865
AT5G05710 Pleckstrin homology (PH) domai... Potri.008G066700
[exp]
6.24 0.6772
AT5G26751 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RE... Potri.013G004700
[exp]
6.70 0.6736 MSK.4
AT2G46800 ATMTP1, ZAT1, Z... ZINC TRANSPORTER OF ARABIDOPSI... Potri.001G450900
[exp]
7.93 0.7071
AT3G03330 NAD(P)-binding Rossmann-fold s... Potri.013G084100
[exp]
9.48 0.6894

Potri.019G046400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.