Plant FIBer expression Database

Potri.019G046801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03130 87 / 1e-17 unknown protein
AT5G17160 79 / 3e-15 unknown protein
AT1G76740 51 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G081600
[exp]
608 / 0 AT3G03130 131 / 4e-32 unknown protein
Potri.001G323900
[exp]
48 / 6e-07 ND /
Potri.002G066450
[exp]
50 / 5e-06 AT1G76740 64 / 1e-09 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038036
[exp]
89 / 4e-18 AT5G17160 95 / 3e-20 unknown protein
Lus10009977
[exp]
87 / 1e-17 AT3G03130 94 / 3e-20 unknown protein
Lus10028114
[exp]
50 / 3e-06 AT1G76740 76 / 2e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.019G046801.1 pacid=42774132 polypeptide=Potri.019G046801.1.p locus=Potri.019G046801 ID=Potri.019G046801.1.v4.1 annot-version=v4.1
ATGGATTTCCACAGTCTTTCGAGGAAAGAGCTCCAAGATCTATGCAAGAAGAACAAGATCCCTGCTAACATGACCAATATCGCCATGGCCGATGCCCTCA
AAGTTCTTGACAAGGTGGAAGGACGTGAGGAGTTCACCAATGTGCCCGAACCCGATCCACAGCAATCCCCAGAGAAAGCTATAAGTGGATCACCAGAAGT
TCCTCAAACTTCTGTTAGAACCTTGACTCGAAGAAAGCCCCTTCGTATTGAGCCTGAAAGCTCAAAACCCTTGACTCGTACTCGATGCACAACAAGAGGA
ACAGTTGTCGGGGAGGGTGATCAAGAGAATAAAACTGCAAATCTCTCAGAGACTCCAATAATGCTAGCCAGGCGAATAAGGACTTCAACAGCTTCTGCTC
GCCACAAAATGGAGAGTAAATCGATGGAAAGTGTTGAGAATCAAGAGAAAAACAATGTGCCGAAGACACCAGCAGCACGGAGTAGCCGGAGGAGGGCTCC
AGCAGTTTCAGCTCGGGGGAAATTAGAGGCTCAGAACGAAGAAAAATCTGTTCAGAGGGTGTACAGCACGAGGCATTCAGTGAGGTTGTTGGAGAAGGGT
ATGGAAGGATTGGGCTTAAAGGAGAAAGAGAGGGTTAGGCCATTGAAGATGGATGGATTGTGCTGGGAAATTGAGGATGTTGAAACGAAGGATGAGACTG
GAGATGATTTGCTTACAAAATCCGAAAAGAGTTTTAAGAAAACCATTGATGCAGAAGCGGTGGCATGCCAAAACCTTGATCATTTACCGGAGGAGAGAAG
GGAAATCAAGCGTGAAATTCAAGAAGAGAGCAACAATGACGAGTATGAAGTGGAAGATTGCAATGCAAAACAGGAAATAGGCCAGAAAGGTGTTTATTCT
GAAGTCGTTTCATTGGATAATGAAAGTGAAATGAACAACGAACTTGAAGAGAATGACATGAGAAATGACTATGAAATGGATCGTTACAATCCAAAATCGG
AAGGCTTAAATGGACAGGATGAATCAAATCCTATTATAGTTGAAAGATCAGAGAAGGCATTACCGGCGACTCAGGAACTGATTTACAACAACGATTCACC
AACCGTAGTATCTGAATTTGTGGAAGATAAGCGGCATGACAATAATGACCTCCAATCAAACTTTGCAATTGTGGGTGAGTCTGTTAGCAATCAATCAGAT
GAAGCTAAAGAAAATGGAAATGCAGAAAGAGTTCTTGAAGATGCTAGCAACCAGATGTCAGAAAGCATACATGAAACTGAAAGTCTCCAGTCATTAATCG
GGTCTTTTTCAACCAATCACTTTGTCACTGGTAATCTTGTGGCACCCTCCAAGGATATCTCAGTTGAGTATAATGATGAAGCACTTGTTGAAATCGATGT
GATGGAAGCTGGAGAACTTGACTTGATATCCCACGAATGCCACCCATCTTGGGTTTCACGTGAGACTCCAGGATCCATAAATCAGATTACTTCTTCCTGT
ACTCTGGCATCTGATAATGCCTCAAGTGAAATCCCTTTGCATAAGGTTCACGAGCATAGCAGTTCAGAGACTTCGATTCATATTACTGTAATGTCACCAG
AAAAATTCGCCCTGGCGGCAGCTCCAGCAGTGGGCTCTCCAACTTCCAAAAGGGAAATTTATCAACCCTGGGTTGCTGGTGGCGCAATGTCAGGTCAAAC
AACATGCTTATTACCCTTCGCAGCTGACACTCTTCAAGGTCAGTTTCCTCGTCCAAGTGAGTTGACACCAAGGAAATCTTATGCATCAGAAATTAACAAG
GAGAGCATTGACGACAATGGAAAAAAAGTGGAACCTAAGAAAGAAAATGCATATAATAAGACCATTGATGAGAAGATATCGGATGAATTAAGCCTAAGGC
AGCTGAGGAAGATGATGAGAGAAAAACTACAGATAGCCAACAACAAGTACAGTGGAGAATATAATGACACAAAGGACAAGACTGGCCCAGACACACTGCC
TCATGAGAGAATTGTAAGCAGGATGCTGAATCAGAGAACTGAGCAGATATAG
AA sequence
>Potri.019G046801.1 pacid=42774132 polypeptide=Potri.019G046801.1.p locus=Potri.019G046801 ID=Potri.019G046801.1.v4.1 annot-version=v4.1
MDFHSLSRKELQDLCKKNKIPANMTNIAMADALKVLDKVEGREEFTNVPEPDPQQSPEKAISGSPEVPQTSVRTLTRRKPLRIEPESSKPLTRTRCTTRG
TVVGEGDQENKTANLSETPIMLARRIRTSTASARHKMESKSMESVENQEKNNVPKTPAARSSRRRAPAVSARGKLEAQNEEKSVQRVYSTRHSVRLLEKG
MEGLGLKEKERVRPLKMDGLCWEIEDVETKDETGDDLLTKSEKSFKKTIDAEAVACQNLDHLPEERREIKREIQEESNNDEYEVEDCNAKQEIGQKGVYS
EVVSLDNESEMNNELEENDMRNDYEMDRYNPKSEGLNGQDESNPIIVERSEKALPATQELIYNNDSPTVVSEFVEDKRHDNNDLQSNFAIVGESVSNQSD
EAKENGNAERVLEDASNQMSESIHETESLQSLIGSFSTNHFVTGNLVAPSKDISVEYNDEALVEIDVMEAGELDLISHECHPSWVSRETPGSINQITSSC
TLASDNASSEIPLHKVHEHSSSETSIHITVMSPEKFALAAAPAVGSPTSKREIYQPWVAGGAMSGQTTCLLPFAADTLQGQFPRPSELTPRKSYASEINK
ESIDDNGKKVEPKKENAYNKTIDEKISDELSLRQLRKMMREKLQIANNKYSGEYNDTKDKTGPDTLPHERIVSRMLNQRTEQI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G03130 unknown protein Potri.019G046801
[exp]
0 1
AT1G07420 SMO2-1, ATSMO1,... Arabidopsis thaliana sterol 4-... Potri.001G245300
[exp]
7.74 0.9162 SMO2.1
AT5G01910 unknown protein Potri.016G138300
[exp]
10.19 0.9369
AT2G26760 CYCB1;4, CYC3 Cyclin B1;4 (.1) Potri.009G066600
[exp]
19.89 0.9079 Pt-CYCB1.2,4
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Potri.009G040200
[exp]
21.67 0.9155
AT4G08330 unknown protein Potri.005G070600
[exp]
21.90 0.9140
AT4G37450 ATAGP18, AGP18 arabinogalactan protein 18 (.... Potri.005G144900
[exp]
26.83 0.8650
AT5G16250 unknown protein Potri.013G127900
[exp]
27.11 0.9133
AT5G45700 Haloacid dehalogenase-like hyd... Potri.004G062900
[exp]
28.63 0.9075
AT3G51930 Transducin/WD40 repeat-like su... Potri.003G202700
[exp]
33.31 0.8275
AT2G44190 EMB3116, EDE1, ... QWRF domain containing 5, EMBR... Potri.006G000400
[exp]
34.20 0.8567

Potri.019G046801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.