Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16760 333 / 7e-114 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT4G08170 229 / 5e-73 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 224 / 1e-70 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT2G43980 67 / 5e-12 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094100 [exp] 331 / 6e-113 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.001G140000 [exp] 325 / 3e-110 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.005G149800 [exp] 236 / 1e-75 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.009G084600 [exp] 221 / 1e-69 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.017G007500 [exp] 84 / 1e-17 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039098 [exp] 387 / 4e-132 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038765 [exp] 372 / 3e-129 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035811 [exp] 336 / 4e-115 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035662 [exp] 226 / 1e-71 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10032808 [exp] 223 / 2e-70 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 218 / 2e-68 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 156 / 1e-45 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 145 / 6e-41 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10033768 [exp] 77 / 2e-15 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Lus10006145 [exp] 69 / 9e-13 AT2G43980 317 / 1e-105 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [poplar] [flax] ATP-grasp PF05770 [poplar] [flax] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Potri.019G047200.10 pacid=42773580 polypeptide=Potri.019G047200.10.p locus=Potri.019G047200 ID=Potri.019G047200.10.v4.1 annot-version=v4.1 ATGTCATCGTTGACCCCCTCAAAACGCCACCGCGTAGGCTACGCACTGCCACCCAAAAAAACCCAAACCTTCATCCGACCCTCCCTCATCCACCACGCAG ACCAACACAACATTGATCTCATCCCCATCGATCCTTCAAGACCTCTTATCGAACAAGGACCCTTGGATTGCGTCATCCATAAACTCTACGGCCCAGATTG GATGTCCCAGCTCCTGCACTTCTCCTCTCTGAACCCTGATGCTCCCATAATTGATCCTCTTGATTCCATCCAGAGACTCCACGATCGGATTTCGATGCTT CAAGTTGTAAGTAATTTAAAAGTTTCTGAAAGAAATCAAGTTTTAGATGTGCCTCGACAACATTTTTTTTCTGATTCAGAAACCATGATGAAGAATTCCG ATGATTTAATTAAGAAATTAGGGTTTCCGCTGATCGCCAAACCGTTAATGGCTGATGGGAGTGAGACCTCTCATAAAATGTATTTAGTTTTTGATAAGGA AGGATTAGACAAGTTAGAGTCGCGGAGGATTATAATGCAAGAATTTGTTAATCATGGTGGGATTATTTTTAAAGTCTATGTGGTTGGTGATTTTGTGAAA TGTGTCAAGAGGAAATCGTTGCCCGATATTAAAGAGGACAAATTGGTTACTTTGAAGGGTCTGCTGCCGTTTTCGCAAATATCCAATCTGGAGGAGAAGA CTGATTGTGGTGATGGTGGTGGTGGTGGGGAGTTTGACAGAGTGGAAATGCCGCCAGTGGATTTTGTTGAGGAAGTAGCCAAGGCAATGAAGGAAGAAAC TGGGATCAGTTTGTTGAACTTTGACGTGATTAGGGATGCTAGAGATGCTAATAGGTATCTTATTATTGATATAAATTATTTTCCTGGGTATGAGAAGATA CCCAATTATGAGTCTGTGTTGACAGATTTTTTATTAAATTCCATGGAAAAGAACAAGAGTGGAGATGTCAGCATGGTGAGGGAGCATGATGATGATTGA
AA sequence Show only first row Show all	>Potri.019G047200.10 pacid=42773580 polypeptide=Potri.019G047200.10.p locus=Potri.019G047200 ID=Potri.019G047200.10.v4.1 annot-version=v4.1 MSSLTPSKRHRVGYALPPKKTQTFIRPSLIHHADQHNIDLIPIDPSRPLIEQGPLDCVIHKLYGPDWMSQLLHFSSLNPDAPIIDPLDSIQRLHDRISML QVVSNLKVSERNQVLDVPRQHFFSDSETMMKNSDDLIKKLGFPLIAKPLMADGSETSHKMYLVFDKEGLDKLESRRIIMQEFVNHGGIIFKVYVVGDFVK CVKRKSLPDIKEDKLVTLKGLLPFSQISNLEEKTDCGDGGGGGEFDRVEMPPVDFVEEVAKAMKEETGISLLNFDVIRDARDANRYLIIDINYFPGYEKI PNYESVLTDFLLNSMEKNKSGDVSMVREHDDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	0	1
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.005G228900 [exp]	2.23	0.7566	RER1.4
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.006G208600 [exp]	6.16	0.6290
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.017G090800 [exp]	12.48	0.6510
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	16.97	0.7202
AT5G43960			Nuclear transport factor 2 (NT...		Potri.002G257000 [exp]	17.88	0.7099
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.005G145900 [exp]	18.00	0.6302	Pt-CKA1.2
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.015G078000 [exp]	22.04	0.7172
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.002G157500 [exp]	23.47	0.6425
AT3G04830			Protein prenylyltransferase su...		Potri.005G051300 [exp]	29.41	0.7059
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Potri.006G151300 [exp]	32.49	0.6227

Compare expression of checked genes

Potri.019G047200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.