Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16750 795 / 0 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G25150 97 / 1e-20 TAF5 TBP-associated factor 5 (.1) AT3G49660 91 / 1e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 87 / 7e-18 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT3G21540 87 / 1e-17 transducin family protein / WD-40 repeat family protein (.1) AT5G23430 87 / 1e-17 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 87 / 1e-17 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 87 / 1e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 86 / 4e-17 Coatomer, alpha subunit (.1) AT1G11160 85 / 6e-17 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079600 [exp] 987 / 0 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 99 / 3e-21 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 98 / 3e-21 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 90 / 2e-19 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 87 / 1e-17 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 87 / 1e-17 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G121100 [exp] 87 / 2e-17 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G045500 [exp] 86 / 3e-17 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 82 / 5e-17 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012706 [exp] 746 / 0 AT5G16750 1144 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10001301 [exp] 744 / 0 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 95 / 5e-21 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 94 / 5e-20 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024447 [exp] 94 / 1e-19 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10033802 [exp] 92 / 3e-19 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10039636 [exp] 89 / 5e-19 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012475 [exp] 90 / 2e-18 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10007449 [exp] 90 / 2e-18 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10018458 [exp] 89 / 6e-18 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF08625 [poplar] [flax] Utp13 Utp13 specific WD40 associated domain
Representative CDS sequence Show only first row Show all	>Potri.019G047300.3 pacid=42774259 polypeptide=Potri.019G047300.3.p locus=Potri.019G047300 ID=Potri.019G047300.3.v4.1 annot-version=v4.1 ATGGATGGACATTGCTTACTGCTGGAAGAGATAAGTGCAGTTTGCTTGTATGAGCAAAAGTCCTCGGATGTTACTGTCTCCTCTGACACAGATGATTCAC CGAGAGGCTTCACTGCTGCTGTTATCCTTCCCTTAGATCAAGGGTTACTTTGTGTGACTGTTGATCATCAGTTTCTGTTCTACTCACTAGTTGTACACCT GGAAGAGAAATTCAAGTTAATGCTGAGCAAGAGGCTTGTTGGGTATAACGAAGAGATTCTTGACATGAGGTTTCTGGGCGAGGAGGAAAAGTTTCTCGCT GTTGCTACAAATCTTGAACAGGTTCAAGTGTATGACTTGGAATCTATGTCATGCTCCTATGTATTGGCAGGCCATACTGAAATTGTTTTGTGCCTCGACA CCTGTGTATCAAGCTCAGGAAGGCCACTTCTTGTAACTGGAAGCAAGGATAACAGTGTAAGATTGTGGAATTCAGAGAGCATAAATTGCATTGGTGTTGG CATGGGACACATGGGAGGTGTTGGAGCTGTTGCTTTTTCAAAGAAGTGGAAGAATTTCTTTGTTAGTGGTAGTAGCGATCGTACCATCAAGGTGTGGAGT ATAGATGGTATCTCAGATGATGCTGACCAACCTATAAATTTGAAAGCAAAAGCTGTGGTGGCAGCCCATGACAAGGATATAAATTCTCTGGCTATTGCAC CAAATGATACTTTAGTTTGTAGCGGTTCACAGGACCGGACAGCTTGTGTATGGAGGCTGCCAGATCTGGTATCTGTAGTTGTACTTAAAGGGCATAAAAG AGGAATATGGTCAGTAGAGTTTTCACCAGTTGATCAGTGTGTCATAACAGCATCTGGTGATAAAACAATAAAGATGTGGGCTATAGCTAATGGGTCATGC TTGAAAACATTTGAAGGACACACATCAAGTGTGTTAAGAGCATCATTTCTTACTCGTGGCACTCAATTTGTTTCGTGTGGTGCTGATGGTTTGGTAAAGC TGTGGACAGTCAAAACAAATGAATGCATTGCTACATATGATCAACATGAGGACAAGGTTTGGGCCTTGGCTATTGGAAGAAAGACAGAAATGTTTGCAAC TGGTGGTGGTGATGCTGTTGTTAATCTGTGGTATGATTCAACTGCTTCAGATAAAGCGGAAGCTTTCCGTAAAGAGGAGGAAGGGGTATTAAGAGGTCAA GAATTGGAAAATGCTGTGTTAGATGCTGACTACAATAAAGCTATCCAAATAGCTTTTGAACTTCACAGGCCTCATAAACTTTTCGAGTTGTTTGCTGAAC TCTGCAGGAAGGATGGCGGCAATCAGATAGAGACAGCCCTCCGAGCTCTTGGCAAGGAAGAAATTCATCTACTTTTTGAGTATATTCGTGAGTGGAATAC AAAGCCAAAATTTTGTCATGTTGCACAATATGTTTTGTTTGGAGTTTTCAACATCTTTCCTCCCACTGAGATTCTTGAGATAAGAGGCATTGGGGAACTT CTTGAAGGTCTTATCCCATATTCCCAGAGGCATTTCAGCAGGATTGACAGGCTTGTGAGAAGCACCTTTTTGCTCGACTACACCCTACATGGAATGTCAG TTATTGAACCAGATACTAATGCAACAGAAATGAATGATGCTGATAATAAGCTTTTAGTAGAAAAAGGTGATCAAGAGCAAGAGTTGACTTCAGAAATGTT GAAAGAGAAGGCTCTCTCAAAGAAACGGAAACCAAACAAATCTAAAGATACTTCACGTAAGAAAGTCAAGGGTGCTGCTTACACAAGTCTAGCTCCAATT CCGTTGAAGGTATAG
AA sequence Show only first row Show all	>Potri.019G047300.3 pacid=42774259 polypeptide=Potri.019G047300.3.p locus=Potri.019G047300 ID=Potri.019G047300.3.v4.1 annot-version=v4.1 MDGHCLLLEEISAVCLYEQKSSDVTVSSDTDDSPRGFTAAVILPLDQGLLCVTVDHQFLFYSLVVHLEEKFKLMLSKRLVGYNEEILDMRFLGEEEKFLA VATNLEQVQVYDLESMSCSYVLAGHTEIVLCLDTCVSSSGRPLLVTGSKDNSVRLWNSESINCIGVGMGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWS IDGISDDADQPINLKAKAVVAAHDKDINSLAIAPNDTLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVEFSPVDQCVITASGDKTIKMWAIANGSC LKTFEGHTSSVLRASFLTRGTQFVSCGADGLVKLWTVKTNECIATYDQHEDKVWALAIGRKTEMFATGGGDAVVNLWYDSTASDKAEAFRKEEEGVLRGQ ELENAVLDADYNKAIQIAFELHRPHKLFELFAELCRKDGGNQIETALRALGKEEIHLLFEYIREWNTKPKFCHVAQYVLFGVFNIFPPTEILEIRGIGEL LEGLIPYSQRHFSRIDRLVRSTFLLDYTLHGMSVIEPDTNATEMNDADNKLLVEKGDQEQELTSEMLKEKALSKKRKPNKSKDTSRKKVKGAAYTSLAPI PLKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	0	1
					Potri.001G298266 [exp]	2.64	0.8840
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.016G084100 [exp]	3.46	0.8672
					Potri.001G298233 [exp]	3.74	0.8837
					Potri.003G027318 [exp]	4.24	0.8797
					Potri.003G027116 [exp]	4.89	0.8770
AT1G55750			BSD domain (BTF2-like transcri...		Potri.005G061432 [exp]	5.65	0.8525
AT5G17910			unknown protein		Potri.019G044500 [exp]	6.32	0.8701
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.009G063800 [exp]	7.74	0.8457
AT3G01720			unknown protein		Potri.001G336400 [exp]	8.94	0.8223
AT4G21490		NDB3	NAD(P)H dehydrogenase B3 (.1)		Potri.011G042500 [exp]	10.77	0.7838

Compare expression of checked genes

Potri.019G047300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.