Plant FIBer expression Database

Potri.019G047480 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00280 139 / 3e-40 ATCG00280.1, PSBC photosystem II reaction center protein C (.1)
ATCG00270 0 / 1 ATCG00270.1, PSBD photosystem II reaction center protein D (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G032700
[exp]
173 / 4e-57 ATCG00280 164 / 1e-49 photosystem II reaction center protein C (.1)
Potri.013G142760
[exp]
159 / 1e-47 ATCG00280 853 / 0.0 photosystem II reaction center protein C (.1)
Potri.008G208700
[exp]
60 / 8e-12 ATCG00280 328 / 4e-112 photosystem II reaction center protein C (.1)
Potri.008G207200
[exp]
0 / 1 ATCG00270 434 / 1e-154 photosystem II reaction center protein D (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00421 PSII Photosystem II protein
Representative CDS sequence
>Potri.019G047480.1 pacid=42774408 polypeptide=Potri.019G047480.1.p locus=Potri.019G047480 ID=Potri.019G047480.1.v4.1 annot-version=v4.1
ATGAGTGCTCTTGGAGTAGTTGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCATTCATGCTTGGATGGTGGCTCA
AGATGAGCCTCATGAAAACCTTATATTGCCTAAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAACTTTAGCTGCCGGGAATGCCCGACT
TATCAATTTTTCTAGTAAACTGTTGGTAGTTGATGTAGCCCATGCTGGATTAATTGTATTCTGGGCCGTAGCAATGAACCTATTTGAAGTGGCCTATTTC
GTACCGGAGAAGCCAATGCATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGTGGGTCCTGGCGGGGAAGTCATAG
AA sequence
>Potri.019G047480.1 pacid=42774408 polypeptide=Potri.019G047480.1.p locus=Potri.019G047480 ID=Potri.019G047480.1.v4.1 annot-version=v4.1
MSALGVVGLALNLRAYDFVSQEIRAAFMLGWWLKMSLMKTLYCLRRFYPVETLFNGTLTLAAGNARLINFSSKLLVVDVAHAGLIVFWAVAMNLFEVAYF
VPEKPMHEQGLILLPHLATLGWGWVLAGKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00280 ATCG00280.1, PS... photosystem II reaction center... Potri.019G047480
[exp]
0 1
Potri.016G115250
[exp]
5.65 0.6657
AT4G14819 Protein of unknown function (D... Potri.010G086000
[exp]
7.93 0.7217
ATMG01275 ND1, ATMG01275.... NAD\(P\)H DEHYDROGENASE 1, NAD... Potri.007G062322
[exp]
33.34 0.6826
AT2G07689 NADH-Ubiquinone/plastoquinone ... Potri.007G062522
[exp]
36.57 0.6798
ATMG01320 NAD2.2, ATMG013... NADH DEHYDROGENASE 2.2, NADH d... Potri.007G062442
[exp]
48.27 0.6702
AT5G59030 COPT1 copper transporter 1 (.1) Potri.001G246000
[exp]
50.51 0.6697
ATMG00650 ATMG00650.1, NA... NADH dehydrogenase subunit 4L ... Potri.007G062622
[exp]
61.96 0.6664
AT2G07751 NADH:ubiquinone/plastoquinone ... Potri.007G062001
[exp]
71.49 0.6643
ATMG01320 NAD2.2, ATMG013... NADH DEHYDROGENASE 2.2, NADH d... Potri.007G062482
[exp]
72.89 0.6582
ATMG00650 ATMG00650.1, NA... NADH dehydrogenase subunit 4L ... Potri.007G061661
[exp]
82.00 0.6547

Potri.019G047480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.