Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16730 608 / 0 Plant protein of unknown function (DUF827) (.1) AT3G02930 583 / 0 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) AT1G65010 558 / 0 Plant protein of unknown function (DUF827) (.1) AT4G27595 522 / 6e-169 Plant protein of unknown function (DUF827) (.1) AT4G40020 93 / 3e-19 Myosin heavy chain-related protein (.1) AT2G37080 56 / 8e-08 RIP3 ROP interactive partner 3 (.1) AT4G33390 51 / 3e-06 Plant protein of unknown function (DUF827) (.1) AT5G55860 44 / 0.0006 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079000 [exp] 1281 / 0 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.007G096600 [exp] 117 / 3e-27 AT4G40020 205 / 6e-58 Myosin heavy chain-related protein (.1) Potri.005G072400 [exp] 117 / 5e-27 AT4G40020 219 / 3e-63 Myosin heavy chain-related protein (.1) Potri.006G131400 [exp] 73 / 6e-13 AT2G37080 473 / 1e-160 ROP interactive partner 3 (.1) Potri.016G085900 [exp] 71 / 2e-12 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1) Potri.001G369200 [exp] 49 / 1e-05 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020373 [exp] 800 / 0 AT5G16730 610 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10009550 [exp] 722 / 0 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10023173 [exp] 63 / 5e-10 AT2G37080 315 / 2e-101 ROP interactive partner 3 (.1) Lus10016626 [exp] 61 / 3e-09 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10000283 [exp] 59 / 2e-08 AT4G40020 190 / 6e-54 Myosin heavy chain-related protein (.1) Lus10022531 [exp] 59 / 2e-08 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10026482 [exp] 54 / 4e-07 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1) Lus10015064 [exp] 45 / 0.0002 AT2G37080 155 / 4e-42 ROP interactive partner 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [poplar] [flax] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Potri.019G047600.2 pacid=42774379 polypeptide=Potri.019G047600.2.p locus=Potri.019G047600 ID=Potri.019G047600.2.v4.1 annot-version=v4.1 ATGTCTTCCAAAACCAAATCTGGTTTGTCTGAAACTCCTCCTAGCAAACCATCACCAGCAACTCCTAGAGTTAGTCAACTGAGTCGAGGAGTGGCTAAAT CAGAGTCTGATTCACTTTCTCCCCTGCAAAGTTCACGTCTTTCAGTTGATCGATCACCACGATCCATCAACTCAAAGCCCACAATTGATCGTCGGACACC AAAGGTTACTAGAGCTACACCCCCTGAAAAACCTCAGACACGAGTGGTGAAGGCTTCAGAGTTGCAGGTGCAATTGAGTCATCTCCAGGAAGATCTAAAG AAAACAAAGGAGCAGTTAGAATTGATTGAAAAAGAGAAGGCACAAGCAATTGATGAACTGAAACAAGCTAAGAAAGCTGCCGAGGATGCAAATGAGAAGC TTCAAGAAGCTATGGTGGCTCAAAAGCGAGCTGAGGAGAATTCTGAGATTGAGAAGTTCCGGGCTGTTGAGCTGGAACAGGCTGGGATTGAGGCAGCCCA GAAGAAGGAAGAGGAATGGCAGAAAGAGCTTGAAGATGTAAGAAGCCAACATGCTTTGGATGTTACTGCCCTTCTCTCTACCACTCAGGAGCTTCAAAGG GTGAAGCAAGAACTGGCCATGACTACTGATACAAAGAACCAGGCACTGAGCCATGCTGATGACGCTACTAAGATTGCTGAGATTCATGCAGAGAAGGTGG AGATTCTTTCAGTTGAGCTTAGCCAGTTGAAGGTATTACTTGATTCAAAGCTTGAAACAGAGGCCAATGAAAGCCACAAGATAGTTTTGCAGCTTAAAGA GGAGATAGATTCATTGAAACAACAGCTTGAGAAAGGTAAAGGTTTTGAGGATAAGTTGATGGAAAGAGAGGCTTTCATAGAACAGCTCAATGTTGATCTA GAAGCTGCCAAGATGGCTGAATCTTATGCCCGTAACTTAGTAGAGGAGTGGAGAAACAGGGTTGAGGAATTAGAGATGCAGGCTGCCGAAGCAAATAAGT TGGAGAGATCTGCATCAGAGTCTTTGGGTTCATTCATGAAACAACTCGAAGCAAACAATGTTTTATTGCATGATGCAGAAACTGAAATGGCTGCTCTGAA AGAGAAGGTTGGGTTGCTGGAAATGACAATTAGAAGACAGAAAGGGGATCTTGAAGAATCAGAACATTCTCTTGGAATGGTAAAGGAAGAAGCATTGTTC ATGGAAAAAAAGGTTGAGTCTCTGATGTCCGAGTTGGAAACTGTGAAGGAGGAGAAAGCCCAGGCTTTGAACAATGAGAAGCTTGCAGCTTCTAGTGTTC AAAGTCTGTTAGAAGAGAAAAACAAAATTGTCACCGAGCTGGAGAATGCCAGGGATGAGGAGGCAAAGAGCAAGAAGGCAATGGAGAGTTTAGCTTCAGC CTTACATGAAGTCTCTGCGGAAGCAAGGGAAGCCAAAGAAAGGCTGGTATCAAATCTAGTGGAGCATGAAAATTATGAAACCCAAATAGAAGACTTAAGA TTGGTCCTGAAGGCAACTAATGAAAAATACGAAACTGTGCTTGATGATGCAAAACATGAGATTGAACTCCTTAAAAAAACTGTTGAAGAATCCAAGAATG AATTTAAGAACTCCAAGGCCATGTGGGATCAAAAAGAAGAAAATCTGGTGAATTCTGTGAGGAAATCAGAAGAAGAAAACATCTCTTTGGAAAAAGAAAT AGATAGGTTGGTGAATTTGCAGAAGCAAACTGAGGAAGAAGCTTGTGGAATGAGGGATGAAGAAGCTCATTTGAAGGATAGCCTGAAGGAAGTTGAAGCT GAGGTGATATCTTTGCAGGAAGCTCTTGGGGAAGCAAAGGTTGAGAGCATGAAACTAAAAGAAAGTTTATTGGCCAAAGAAAATGAGTTACAGAATATTA TTCTGGAAAACAAAGAGCTCCGAACTAAGGAAGCTTCTTCACTTAAGAAGGTTGAGGAGTTGTCTAAGTTACTTGAGGAAGCTATGGCTAAAATTCAAAC GGTGGAAAATGCGGAGCTAACAGACAGTGAAAAGGACTATGATTTGCTTCCAAAGATGATTGAGTTCTCCGAAGAAAATGGACATGTGAGAGAAGAGAAG CCCAAAGTGGAGGAGCTTCCACCACAGCAAACTAGTGAGCTGAAAACAGAAAATGCAATGGAACAGTTTAATGGCGTGACAAATGAGGCTGTTCAGATGG ATGCTCACAAAATTGAGAATGTGAATGGAAAACCGAAGGAAGATGAGAGCAAGGAAAAGGAAGATAACTCTGTGGAGGTTGAATTTAAGATGTGGGAGAG TTGCAAGATTGAAAAGGAGTTTTCACCGGAAAGAGAAATGGAGCAGGAATCCTTCGAGGAGAAAGTGGACTCCAAGGTGGATGGTGGTGAGAGCTTCGAT CAAACAAATGGTTTATCTTCAACTGAAAATGTGGATGATGGTGGAAGCTCACCTACAAAGCAGCAACAGCAGAAGAAGAAAAAGCCTTTGCTCCGCAAGT TTGGAAACCTACTCAAGAAGAAGGGAACGAGCAACCAGAAGTAG
AA sequence Show only first row Show all	>Potri.019G047600.2 pacid=42774379 polypeptide=Potri.019G047600.2.p locus=Potri.019G047600 ID=Potri.019G047600.2.v4.1 annot-version=v4.1 MSSKTKSGLSETPPSKPSPATPRVSQLSRGVAKSESDSLSPLQSSRLSVDRSPRSINSKPTIDRRTPKVTRATPPEKPQTRVVKASELQVQLSHLQEDLK KTKEQLELIEKEKAQAIDELKQAKKAAEDANEKLQEAMVAQKRAEENSEIEKFRAVELEQAGIEAAQKKEEEWQKELEDVRSQHALDVTALLSTTQELQR VKQELAMTTDTKNQALSHADDATKIAEIHAEKVEILSVELSQLKVLLDSKLETEANESHKIVLQLKEEIDSLKQQLEKGKGFEDKLMEREAFIEQLNVDL EAAKMAESYARNLVEEWRNRVEELEMQAAEANKLERSASESLGSFMKQLEANNVLLHDAETEMAALKEKVGLLEMTIRRQKGDLEESEHSLGMVKEEALF MEKKVESLMSELETVKEEKAQALNNEKLAASSVQSLLEEKNKIVTELENARDEEAKSKKAMESLASALHEVSAEAREAKERLVSNLVEHENYETQIEDLR LVLKATNEKYETVLDDAKHEIELLKKTVEESKNEFKNSKAMWDQKEENLVNSVRKSEEENISLEKEIDRLVNLQKQTEEEACGMRDEEAHLKDSLKEVEA EVISLQEALGEAKVESMKLKESLLAKENELQNIILENKELRTKEASSLKKVEELSKLLEEAMAKIQTVENAELTDSEKDYDLLPKMIEFSEENGHVREEK PKVEELPPQQTSELKTENAMEQFNGVTNEAVQMDAHKIENVNGKPKEDESKEKEDNSVEVEFKMWESCKIEKEFSPEREMEQESFEEKVDSKVDGGESFD QTNGLSSTENVDDGGSSPTKQQQQKKKKPLLRKFGNLLKKKGTSNQK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	0	1
AT2G46710			Rho GTPase activating protein ...		Potri.002G176800 [exp]	1.73	0.9426
AT3G51580			unknown protein		Potri.006G108400 [exp]	3.00	0.9229
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	3.46	0.9285
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.016G086300 [exp]	4.47	0.9228
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.011G067400 [exp]	4.89	0.9289
AT5G42350			Galactose oxidase/kelch repeat...		Potri.002G007700 [exp]	6.00	0.9121
AT2G27740			Family of unknown function (DU...		Potri.009G147500 [exp]	6.32	0.8913
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	6.63	0.9282
AT1G48780			unknown protein		Potri.015G045700 [exp]	6.92	0.9267
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	7.41	0.9222

Compare expression of checked genes

Potri.019G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.