Plant FIBer expression Database

Potri.019G047800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G42050 704 / 0 vacuolar ATP synthase subunit H family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G078700
[exp]
827 / 0 AT3G42050 754 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020335
[exp]
759 / 0 AT3G42050 744 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
Lus10005658
[exp]
741 / 0 AT3G42050 724 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF03224 V-ATPase_H_N V-ATPase subunit H
CL0020 TPR PF11698 V-ATPase_H_C V-ATPase subunit H
Representative CDS sequence
>Potri.019G047800.1 pacid=42773834 polypeptide=Potri.019G047725.1.p locus=Potri.019G047800 ID=Potri.019G047800.1.v4.1 annot-version=v4.1
ATGGAGCAGGCCGAACTGACTACAGTGCAGGTTCTGAAGAGGGATATCCCATGGGAGACATACATGGTGACCAAGCTAATTTCCGGGACAGATCTTCAAC
TTTTAAGGCGTTATGATAATAGACCTGAAAGTTATAGGGCACAATTGTTAGATGATGATGGTCCAGCTTATGTTCAGGTATTTGTTACCATATTAATTGA
CATTTTTAAGGAAGAAACGGTTGAATATGTTCTGGCTTTAATTGATGAAATGCTTACAGCAAACCCAAAACGAGCCAGATTATTCCATGATAAGTCTCTT
GCTAATGATGGTTCTTATGAACCTTTCTTAAGATTGCTTTGGAAAGGTAACTGGTTCATACAAGAAAAGAGCTGCAAGATACTTGCCTTGATTGTAAGTG
CTAGGCCAAAAACACAAGATGACCTTCTTTCAAATGGAGAAGCCTCAAATTCAAAGAGCAAAATTACTTGCGTTGATGATGTGCTAAAGGGATTGGTTGA
ATGGTTTTGTGCCCAGCTGAAGAAGCCTTCGAATCCTAGTCGTTCCATTCCAACTGCAATTAGCTGTCTAGCAACATTACTCAAGGAACCTGTGGTCAGA
TCTTTGTTTGTTCAAGGAGATGGTGTGAAGTTGCTGATACCATTAATTTGTCCTGCATCCACCCAGCAATCTATTCAGCTTCTTTATGAAACATGTCTCT
GTGTCTGGCTATTGTCTTACTATGAACCTGCTATCAAATACTTGGCTACTTCAAGATCATTGCCACGACTAGTAGATGTCGTAAAGAGTTCCACAAAAGA
GAAGGTTGTCAGAGTGGTGGTCTTGACCCTTAGAAACTTGCTTTCCAAAGGTACTTTTGGTGCTCAGATGGTGGACCTTGGATTGCCACAAATTGTTCAA
AATTTGAAAGCACAAGCATGGAGTGATGAGGACCTACTGGAGGCTCTGAACCAAATAGAAGAGGGGGTAAAGGATAACATTAAGAAATTGAGTTCGTTCG
ACAAATACAAGCAGGAAGTTCTCCTTGGCCATCTTGACTGGTCTCCTATGCACAAAAATCCTGCATTCTGGTGTGAAAATTTCACGAATTTTGAAGAGAA
TGATTTCCAGATTCTGAGGGTCCTCGTAACAATTTTGGACACATCCAATGATCCAAGAGCTTTGGCTGTTGCTTGCTTCGATCTCTCACAGTTTATCCAG
TACCATCCTGCTGGCCGGATCATAGTGACAGATCTTAAGGCCAAGGAAAGGATGATGAAATTAATGAACCATGAAAATGCTGAAGTTACTAAAAACGCTC
TTCTCTGTATTCAAAGGCTCTTCCTAGGTGCAAAGTATGCAAGCTTTCTGCAGGTCTGA
AA sequence
>Potri.019G047800.1 pacid=42773834 polypeptide=Potri.019G047725.1.p locus=Potri.019G047800 ID=Potri.019G047800.1.v4.1 annot-version=v4.1
MEQAELTTVQVLKRDIPWETYMVTKLISGTDLQLLRRYDNRPESYRAQLLDDDGPAYVQVFVTILIDIFKEETVEYVLALIDEMLTANPKRARLFHDKSL
ANDGSYEPFLRLLWKGNWFIQEKSCKILALIVSARPKTQDDLLSNGEASNSKSKITCVDDVLKGLVEWFCAQLKKPSNPSRSIPTAISCLATLLKEPVVR
SLFVQGDGVKLLIPLICPASTQQSIQLLYETCLCVWLLSYYEPAIKYLATSRSLPRLVDVVKSSTKEKVVRVVVLTLRNLLSKGTFGAQMVDLGLPQIVQ
NLKAQAWSDEDLLEALNQIEEGVKDNIKKLSSFDKYKQEVLLGHLDWSPMHKNPAFWCENFTNFEENDFQILRVLVTILDTSNDPRALAVACFDLSQFIQ
YHPAGRIIVTDLKAKERMMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G42050 vacuolar ATP synthase subunit ... Potri.019G047800
[exp]
0 1
AT5G12470 Protein of unknown function (D... Potri.001G256300
[exp]
1.00 0.9220
AT2G20360 NAD(P)-binding Rossmann-fold s... Potri.014G193300
[exp]
1.41 0.9122
Potri.006G273733
[exp]
2.44 0.9007
AT3G50860 Clathrin adaptor complex small... Potri.005G122900
[exp]
4.47 0.8892
AT1G29810 Transcriptional coactivator/pt... Potri.011G078900
[exp]
4.58 0.8564
AT3G59300 Pentatricopeptide repeat (PPR)... Potri.014G151700
[exp]
9.38 0.8538
AT3G53710 AGD6 ARF-GAP domain 6 (.1.2) Potri.016G095100
[exp]
9.94 0.8316
AT3G51370 Protein phosphatase 2C family ... Potri.007G061100
[exp]
10.81 0.8429
AT1G55840 Sec14p-like phosphatidylinosit... Potri.001G369400
[exp]
12.16 0.7672
AT1G13570 F-box/RNI-like superfamily pro... Potri.008G110400
[exp]
12.96 0.7896

Potri.019G047800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.