Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43760 156 / 5e-42 DNAse I-like superfamily protein (.1) AT1G40390 120 / 8e-30 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G128921 [exp] 812 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.004G128880 [exp] 812 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.004G128860 [exp] 812 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.004G128961 [exp] 812 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.004G128941 [exp] 812 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.004G128901 [exp] 811 / 0 AT1G43760 149 / 3e-39 DNAse I-like superfamily protein (.1) Potri.012G063901 [exp] 727 / 0 AT1G43760 266 / 1e-80 DNAse I-like superfamily protein (.1) Potri.005G151275 [exp] 723 / 0 AT1G43760 268 / 1e-81 DNAse I-like superfamily protein (.1) Potri.003G047001 [exp] 649 / 0 AT1G43760 265 / 5e-82 DNAse I-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016313 [exp] 61 / 5e-10 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.019G047975.1 pacid=42774128 polypeptide=Potri.019G047975.1.p locus=Potri.019G047975 ID=Potri.019G047975.1.v4.1 annot-version=v4.1 ATGATTATTGGATGTTGGAATATTAGAGGTTTGAATGATCCTATAAAGCATTCAGAATTGCGTCGGCTCATCCATCAAGAGAGGATAGCTCTTTTTGGTC TGGTTGAAACTCGAGTTAAAGACAAGAATAAAGATAATGTTACTCAACTTCTTCTGCGTTCTTGGTCCTTCTTGTATAATTATGATTTCTCTTGTCGTGG GTGTATTTGGGTTTGTTGGAATGCTGATACGGTGAAGGTGGATGTTTTTGGAATGTCAGACCAGGCTATTCATGTTTCTGTCACTATATTAGCTACCAAT ATCAGTTTCAATACTTCAATTATTTATGGAGATAATAATGCTTCCTTACGTGAGGTATTATGGTCTGATATTGTGAGTCGTAGTGATGGATGGGAGTCAA CCCCGTGGATTCTTATGGGTGATTTTAATGCTATCTGCAACCAGTCGGACAGGTTAGGAGGGTCTACTACGTGGGCTGGTACTATGGACAGATTGGATAC ATGTATTCGAGAAGCCAAAGTAGATGATCTTCGGTATTCAGGTATGCATTATACTTGGTCGAACCAATGTCCTGAGAATCTGATTATGCGGAAACTAGAT AGAGTGCTTGTCAATGAGAAGTGGAATCTGAACTTTCCATTATCGGAAGCGAGATTTTTGCCTTCGGGTATGTCAGACCATTCTCCTATGGTGGTAAAGG TTATTGGCAATGATCAGAACATAAAGAAACCATTCAGATTCTTCGATATGTGGATGGATCATGACGAGTTCATGCCCTTGGTGAAGAAGGTATGGGACCA GAATTCAGGGGGTTGTCCAATGTATCAGCTGTGTTGCAAACTAAGAAAGCTAAAGCAGGAATTGAAATTTTTCAATATGGCTCACTTCTCCAACATTTCA GATAGAGTGAAAGATGCAAAAAACGAAATGGATAAGGCTCAACAGGCTCTGCATACAGCGCATGAGAATCCAATTTTGTGCATGCGAGAAAGGGATGTTG TTCATAAATACGCTTCTACCGTCAGGGCTGAAGAGAGTTTTTTCAAACAGAAGGCAAGGATACAATGGCTTAGCTTAGGGGATCAGAATACTAGCTACTT TCACAAATCAGTAAATGGAAGACAGAATAGGAATAAGCTTCTATCACTTACAAGGGAGGATGGAGAGGTTGTCGAAGGACACGAGGCAGTCAAATCAGAA GTAATTGCATACTTCCATCGTGTGTTAGGAGTGATCAGATGCCTAGGGTTCTGA
AA sequence Show only first row Show all	>Potri.019G047975.1 pacid=42774128 polypeptide=Potri.019G047975.1.p locus=Potri.019G047975 ID=Potri.019G047975.1.v4.1 annot-version=v4.1 MIIGCWNIRGLNDPIKHSELRRLIHQERIALFGLVETRVKDKNKDNVTQLLLRSWSFLYNYDFSCRGCIWVCWNADTVKVDVFGMSDQAIHVSVTILATN ISFNTSIIYGDNNASLREVLWSDIVSRSDGWESTPWILMGDFNAICNQSDRLGGSTTWAGTMDRLDTCIREAKVDDLRYSGMHYTWSNQCPENLIMRKLD RVLVNEKWNLNFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNSGGCPMYQLCCKLRKLKQELKFFNMAHFSNIS DRVKDAKNEMDKAQQALHTAHENPILCMRERDVVHKYASTVRAEESFFKQKARIQWLSLGDQNTSYFHKSVNGRQNRNKLLSLTREDGEVVEGHEAVKSE VIAYFHRVLGVIRCLGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43760			DNAse I-like superfamily prote...		Potri.019G047975 [exp]	0	1
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	9.79	0.7831
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084501 [exp]	11.22	0.7290
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	11.31	0.7507
AT5G05800			unknown protein		Potri.001G370432 [exp]	13.41	0.7197
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084100 [exp]	20.90	0.7156
AT1G53050			Protein kinase superfamily pro...		Potri.005G086900 [exp]	30.19	0.6727
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016500 [exp]	34.46	0.6797
					Potri.001G440500 [exp]	34.94	0.6901
AT3G22210			unknown protein		Potri.016G018650 [exp]	36.49	0.6513
					Potri.018G110450 [exp]	38.24	0.7516

Compare expression of checked genes

Potri.019G047975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.