Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03140 364 / 3e-114 Tudor/PWWP/MBT superfamily protein (.1) AT3G21295 155 / 2e-39 Tudor/PWWP/MBT superfamily protein (.1) AT1G51745 135 / 3e-33 Tudor/PWWP/MBT superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G081400 [exp] 1174 / 0 AT3G03140 202 / 5e-55 Tudor/PWWP/MBT superfamily protein (.1) Potri.003G045600 [exp] 169 / 1e-43 AT1G51745 362 / 4e-116 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.001G193900 [exp] 169 / 2e-43 AT1G51745 360 / 3e-115 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.012G081500 [exp] 43 / 0.001 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013363 [exp] 300 / 6e-91 AT3G03140 322 / 1e-99 Tudor/PWWP/MBT superfamily protein (.1) Lus10004108 [exp] 282 / 3e-84 AT3G03140 311 / 3e-95 Tudor/PWWP/MBT superfamily protein (.1) Lus10037614 [exp] 163 / 9e-42 AT3G21295 370 / 3e-119 Tudor/PWWP/MBT superfamily protein (.1) Lus10006874 [exp] 155 / 2e-39 AT1G51745 338 / 1e-106 Tudor/PWWP/MBT superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Potri.019G048100.1 pacid=42773726 polypeptide=Potri.019G048100.1.p locus=Potri.019G048100 ID=Potri.019G048100.1.v4.1 annot-version=v4.1 ATGGAGGAGAGTTCGAGGACGGCGGCGGATGGTAACATAGGTCCGATTGTTTGGGTGCGGAGAAGAAACGGGTCGTGGTGGCCTGGTCAGATAATGGAGG CGGATGAACTGGCAGAGTATAATCTAACATCGCCGCGAACAGGGACTCCGGTCAAACTCCTTGGAAGGGATGATGCTAGCGTGGACTGGTACAATTTAGA AAAGTCGAAGCGTGTGAAGGCATTTCGGTGTGCTGAATTTTCTGATTGTATTGAAAGGGCTGAATCTGCCCTGGGCATGCCAATCAAGAAAAGAGAGAAA TATGCACGTCGAGAAGATGCAATTCTACATGCCCTTGAGCTTGAAAAGCAACTCTTGAGAAAGCAAGGAGCATCGGGTGTTGCTTCTGATTGCCCAAGAA GTAAATCATCTGGGTCTGTGAAGACCGAGCTGGGTGCATTTTCAGAAGGCTCAATAAATTATAGTGGAAAACCCGAGGATGTTAAATTGAACCAAACTTT GAGAGGAGTTGATATAGAGATTCCAGGCAGCCCACTAATTCCACTGAAAGCCAAGGATGGAGATCAGTCAGTCTCGGAATTTCATAGTGAGGCAATGCTG CGGATGAGAGGTTCGCAAGACTTTGGGCGGAGGACTGCCTTAAAGAGAAAATTTTCACCCTCTGTTGATTTAGATGGTTCTTGGAGAAGACCTGTAGCAG ACAACAAATATGAAGATCCTCCTGACACTTTCCCTCATGTGGAAATAACCCCTCATGCAAATGGAGTGGAGAAGATGGGAGCTATTTTCCGGGCAAAGAG GACTAGATGTGTTTACTTGCCAGCTGATTCTAGTGATTCTATGGATGATAAGGACATTCCTCCAAACCAGAATAAGTTCTTTCCTTCTGGTTTTGAAGCC GAGTTGCATTCCCATCCTGGTTCTTCAAATGAAGAAGACTCTTCATCTGGATTTATGGAAGATGTTGAATCTGATTTGTCTGGATCTAATTCATCTGAAT CCGAGTCTGATTCTTCTCAGACTGAACCAGATGTGGACAAAGAAATGGTTATTTTTTCAGATGTTGCTTTCCCTATAGAAGCTGAGCAGGATGCTCTGGG ACAGCCTGAAGCAACATTAGAACATGCTAGTACAAGCAGCGAGGAGTCTGATGGATTGATATCTTCTGATGACATGGATGACCTTTACCATGATGAACAT TTTCTTGCACATGAAGCAGTGTCCAAATGGAAATTGAAGGGGAAAAGGAACATTCGATATCTTACACAGAAGCCTGTCAATATGGAATATGGAAAAGGTT CTAATGGAGCTTCTCATGGAACCTTCCATGGGATGAAGGGAAGTATCTCAAGCCAAAGGGCATTTGGTGCCCATGATGCCAATTTGGGCAGAAAATATTT TGGGTCCAAAATGTATCGTCTTGGTAATAGAGGTTGCTCTTTTCCATCAAGGTTCGTGTCCAGAGATCGAAATAATACTGGTCGTAATATGATAAAATGG CAAGGCATGGGTTTGGAGGATCAACATACTTTCAGGAGACATTGGGAAGACATGGGGGAGCATTCCAATCCAATATTTGTTGGCCAGCACCATTTTGGGG GAAGGGCAAGATCTTTGTTAGTAGATGTGGATTTGAAGGTCCAATCAAGCTACCAAAAAGATCGTGTACCTATTGTTTCTCTCATCAGCAAGTTTGATGG GAAGGCAATAATAGGACATCCGATACCAATTGAAGCTGTGGAAGATGGTTTATCTGAAACTCAGTTTCCTTTAAATGATCAGTTTCCTTTAAATGATTAT TATAGCAACGAAGCAGTTGACCAAGACGAAAGTACATCACTTCAACCAGCGTGGCGGACTGCAAGAAGGACCAATTCTAGGGTACCACGCCCACATTTAT TATCATTGTCGGGCTTCGATGCTGCTGCTGAGGATATTCAATTTATGGATCAAGAAAAAAGAGTTCCATTTAGGAAATCAAGTGGGGGCAGTTTCAGTTA CAAGGCAAACCTGGCAAGGAAGAGCCTACCTCATGTTCCCCAGCCGTCGGCACAAAAGAAGTTCCCTAGAAAGATGCCAAAGAAAGTAAGCTTACCATCT AATCAAAAAACAAGAACCCTGTCATCAATTGGTATTAAGCAGATTTTTGTTAGGAATCCTGTACAAGATACGGGTAATGGTAAAATGGATGGGCTAATCA AACCTGAGACATCTGGGCCAACTACAGTTGCATGCATACCTGTGAAGTTAGCATTCAGTAGGTTGCTTGAGAAGATCAATAGGCCACCATCAACCACAGT TACTAAGGCGGTGGTCTTGAACAGGGATGGGGATAGGGAACCTTCATAG
AA sequence Show only first row Show all	>Potri.019G048100.1 pacid=42773726 polypeptide=Potri.019G048100.1.p locus=Potri.019G048100 ID=Potri.019G048100.1.v4.1 annot-version=v4.1 MEESSRTAADGNIGPIVWVRRRNGSWWPGQIMEADELAEYNLTSPRTGTPVKLLGRDDASVDWYNLEKSKRVKAFRCAEFSDCIERAESALGMPIKKREK YARREDAILHALELEKQLLRKQGASGVASDCPRSKSSGSVKTELGAFSEGSINYSGKPEDVKLNQTLRGVDIEIPGSPLIPLKAKDGDQSVSEFHSEAML RMRGSQDFGRRTALKRKFSPSVDLDGSWRRPVADNKYEDPPDTFPHVEITPHANGVEKMGAIFRAKRTRCVYLPADSSDSMDDKDIPPNQNKFFPSGFEA ELHSHPGSSNEEDSSSGFMEDVESDLSGSNSSESESDSSQTEPDVDKEMVIFSDVAFPIEAEQDALGQPEATLEHASTSSEESDGLISSDDMDDLYHDEH FLAHEAVSKWKLKGKRNIRYLTQKPVNMEYGKGSNGASHGTFHGMKGSISSQRAFGAHDANLGRKYFGSKMYRLGNRGCSFPSRFVSRDRNNTGRNMIKW QGMGLEDQHTFRRHWEDMGEHSNPIFVGQHHFGGRARSLLVDVDLKVQSSYQKDRVPIVSLISKFDGKAIIGHPIPIEAVEDGLSETQFPLNDQFPLNDY YSNEAVDQDESTSLQPAWRTARRTNSRVPRPHLLSLSGFDAAAEDIQFMDQEKRVPFRKSSGGSFSYKANLARKSLPHVPQPSAQKKFPRKMPKKVSLPS NQKTRTLSSIGIKQIFVRNPVQDTGNGKMDGLIKPETSGPTTVACIPVKLAFSRLLEKINRPPSTTVTKAVVLNRDGDREPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Potri.019G048100 [exp]	0	1
AT3G14830			unknown protein		Potri.003G026500 [exp]	4.24	0.7380
AT3G61800			unknown protein		Potri.002G171600 [exp]	11.87	0.7481
AT5G30490			unknown protein		Potri.010G151300 [exp]	17.49	0.6874
AT1G61040		VIP5	vernalization independence 5, ...		Potri.011G047900 [exp]	21.90	0.6939
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.006G218900 [exp]	32.12	0.6499
AT4G19670			RING/U-box superfamily protein...		Potri.015G117600 [exp]	33.67	0.6472
AT1G49760		PABP8, PAB8	poly(A) binding protein 8 (.1)...		Potri.014G025400 [exp]	39.11	0.6423
AT3G29270			RING/U-box superfamily protein...		Potri.012G067200 [exp]	39.49	0.6154
AT3G50690			Leucine-rich repeat (LRR) fami...		Potri.007G027500 [exp]	42.20	0.6701
AT3G60410			Protein of unknown function (D...		Potri.014G044800 [exp]	43.41	0.6460

Compare expression of checked genes

Potri.019G048100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.