Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16790 228 / 1e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G39540 42 / 0.0001 ATSK2 shikimate kinase 2 (.1.2.3) AT2G21940 40 / 0.0003 ATSK1 shikimate kinase 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084600 [exp] 41 / 0.0002 AT2G21940 304 / 2e-103 shikimate kinase 1 (.1.2.3.4.5) Potri.007G081000 [exp] 40 / 0.0004 AT2G21940 323 / 9e-111 shikimate kinase 1 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041345 [exp] 199 / 1e-65 AT2G16790 185 / 3e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037373 [exp] 135 / 1e-40 AT2G16790 125 / 6e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035843 [exp] 44 / 2e-05 AT2G21940 304 / 5e-103 shikimate kinase 1 (.1.2.3.4.5) Lus10036626 [exp] 43 / 7e-05 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01202 [poplar] [flax] SKI Shikimate kinase
Representative CDS sequence Show only first row Show all	>Potri.019G048200.1 pacid=42773424 polypeptide=Potri.019G048200.1.p locus=Potri.019G048200 ID=Potri.019G048200.1.v4.1 annot-version=v4.1 ATGCCACTTTTCACAGAAATCAATTTGCTGTCAGGTAAAGCGATTGTAATCATGGGTGTCAGTGGCGCTGGGAAATCTACAATAGGTGAGCTTCTGGCCA AAGCTTTGGACTGTAGTTTTCTGGATGCTGATGATTTTCACCCTCAATCAAACAAAGACAAAATGCATCAAGGAATACCTCTAACAGAGGAAGACCGGAT TCCATGGCTTGAAATCCTACAAGATGCTTTAAGGGAGAGCTTGATCAGTGGAAAAACTGTAGTGCTCAGCTGTTCTGCTCTGCAGAAACAATATCGAGAA ATTCTTAGATCTGCAGACTCTGATTACCATCATGGAAGCTTTAACAGTGCAGTTAAGTTCGTGTTGCTGGATGCCAAGGCTGAGGTGCTTGCGGAGCGAT TAGATAAAAGAGCTGCAGAAGGGAAGCATTTCATGCCGGCAAAGCTGTTGCAATCTCAGTTGGAGTTGCTTCAGATAGATGATTCTGAAGCAATATGTAA AGTTGATGCTACTCTAAATCCTCAAGCACTTGTAAATGCCATAAAAACTTTGATTTTCGGACCAAGAAAACCAATTGCATTATAA
AA sequence Show only first row Show all	>Potri.019G048200.1 pacid=42773424 polypeptide=Potri.019G048200.1.p locus=Potri.019G048200 ID=Potri.019G048200.1.v4.1 annot-version=v4.1 MPLFTEINLLSGKAIVIMGVSGAGKSTIGELLAKALDCSFLDADDFHPQSNKDKMHQGIPLTEEDRIPWLEILQDALRESLISGKTVVLSCSALQKQYRE ILRSADSDYHHGSFNSAVKFVLLDAKAEVLAERLDKRAAEGKHFMPAKLLQSQLELLQIDDSEAICKVDATLNPQALVNAIKTLIFGPRKPIAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16790			P-loop containing nucleoside t...		Potri.019G048200 [exp]	0	1
AT2G18460		LCV3	like COV 3 (.1)		Potri.005G124100 [exp]	3.87	0.8916
AT5G27830			unknown protein		Potri.005G024200 [exp]	5.91	0.8890
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004232 [exp]	10.67	0.8901
AT4G14600			Target SNARE coiled-coil domai...		Potri.002G102400 [exp]	10.95	0.8921
					Potri.003G116450 [exp]	12.96	0.8494
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Potri.011G098500 [exp]	16.52	0.8689
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.014G019100 [exp]	16.79	0.8268
AT3G17380			TRAF-like family protein (.1)		Potri.017G049100 [exp]	21.33	0.8861
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.013G123000 [exp]	21.72	0.8889
AT2G37150			RING/U-box superfamily protein...		Potri.008G041201 [exp]	23.91	0.8866

Compare expression of checked genes

Potri.019G048200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.