Plant FIBer expression Database

Potri.019G048700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05310 559 / 0 TLC ATP/ADP transporter (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030543
[exp]
565 / 0 AT5G05310 597 / 0.0 TLC ATP/ADP transporter (.1.2.3)
Lus10012891
[exp]
565 / 0 AT5G05310 573 / 0.0 TLC ATP/ADP transporter (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF03219 TLC TLC ATP/ADP transporter
Representative CDS sequence
>Potri.019G048700.3 pacid=42774691 polypeptide=Potri.019G048700.3.p locus=Potri.019G048700 ID=Potri.019G048700.3.v4.1 annot-version=v4.1
ATGAAAAGGAAGAAGAAAATGTCAGTACTGAACATGGTAATGGATAGGTGGAGGCCTCAATTAGATGCGATCCTCTCCACCTTCGTGTCCATCTACCCTC
ACGAAACCTCACCTCTCCTTCACTCCTCTTCCTGCTTTTTCTTCATTTTGAGTGCATATTTTGTAGTGTTACCATTGCGGGATGAAGGTGCAATCTCTCT
AGGTTTATCGAAGCTTCCAGCTCTCTTTATCGGATCCTTATTCCTCACCTTGATTGCTGCTCCTTTATCAACTCTCCTTTTCTCTTTCCCTAATTTCTCT
AAATCCAAGGCTTTGTTTTTGATACACAGGTTTTTTAGTGTTTCTCTTGTTCTCTTCTTCTTTCTATGGCATTTCTCTTCCTCTGCTTCTGCTGAGTTTT
CGCTCTTCAAGTCAAAGGGTACTGTTGCTATATCAACTGAATTGAAAGAGGGTTTGAAGGTTGATGTTGACAGAACCAGTAGTACATATTCTGGAAGTTG
GGATGATCATGGATGGTTTTATATTTCTGTCAGAATTGGATTGTTTCTCTGGGTTGCGCTGCTTAATCTTATTACCATATCATCGACTTGGGCTAGGGTT
ATTGATGTGATGGATAGTGAGTCAGGTTCAAGATTGTTTGGGTTCATTGGTGCTGGTGCTACACTTGGTCAGCTATTTGGATCGTTGTTTGCTACATCAA
TGGCTTGGTTGGGTCCTTTTTTACTTCTATTTGCTGCTTTGTTGATGGAACTAGCTGCACAGTCATCAAAAGGGATCAACAAGGATGTATCCCATCTTCC
TCATGAATTATCTCCCATAAGAAAAGTTGATGCTGATCAGCATAGTGAGGCTGATGGACGATCATCACCAGCTTTCAAAGTCTCTTCTCCAAAGTCTCCT
TCATCCAGGATGAGGCCTCAGCTTTGGGCCATCTTAGATGGGTTTCGGCTTGTATTATCTTCAACTTATTTGTTGAATGTGTCTCTATTCCTGTGGCTGA
GTGCAGTTATTTCGTCATTCTTCTATTTTCAGAAAGTAACAGTAATTGCCATGACTGTTTCAAGCTCTCTTGGAAGAAGAAAATTGTTTGCCCAGATAAA
TAGCTTCACTGCTGTTTTTATCCTTGCTGGACAACTTACTTTAACAGGACGCATCCTTACTTTAGCTGGGGTTACTGCAGCAATATGCTCTGCTCCGGTT
GCTGCCTTCTCAAATTTGGTTGCTATTGCTGTTTGGCCAACTTGGGTAGCAGTTGCCATCTGTGAGACTGTACGGAAGGTGGTTACTTATGTAGTGACCA
GGCCTGGAAGAGAACTTCTGTTTACTGTGGTCACTCAAGAAGAGAAATACAAAGCTAAGGTTTGCATAGATGTCATTGTTCAACGGCTCGGAGATGCTAC
AGCTGCAGGAATGTACAAACTACTATTCAGCACTCTTCATGGGAGGACATCAACTGTGTCTCTTTATGCTCTGCCTATCTGTTTACTTTGGATTTTTACA
GCATTCCATTTAGGACAGCGGCAAGCTCAACTTGCAAAGCTCCAGGCCGTCTAA
AA sequence
>Potri.019G048700.3 pacid=42774691 polypeptide=Potri.019G048700.3.p locus=Potri.019G048700 ID=Potri.019G048700.3.v4.1 annot-version=v4.1
MKRKKKMSVLNMVMDRWRPQLDAILSTFVSIYPHETSPLLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPALFIGSLFLTLIAAPLSTLLFSFPNFS
KSKALFLIHRFFSVSLVLFFFLWHFSSSASAEFSLFKSKGTVAISTELKEGLKVDVDRTSSTYSGSWDDHGWFYISVRIGLFLWVALLNLITISSTWARV
IDVMDSESGSRLFGFIGAGATLGQLFGSLFATSMAWLGPFLLLFAALLMELAAQSSKGINKDVSHLPHELSPIRKVDADQHSEADGRSSPAFKVSSPKSP
SSRMRPQLWAILDGFRLVLSSTYLLNVSLFLWLSAVISSFFYFQKVTVIAMTVSSSLGRRKLFAQINSFTAVFILAGQLTLTGRILTLAGVTAAICSAPV
AAFSNLVAIAVWPTWVAVAICETVRKVVTYVVTRPGRELLFTVVTQEEKYKAKVCIDVIVQRLGDATAAGMYKLLFSTLHGRTSTVSLYALPICLLWIFT
AFHLGQRQAQLAKLQAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05310 TLC ATP/ADP transporter (.1.2.... Potri.019G048700
[exp]
0 1
AT3G08505 C3HZnF zinc finger (CCCH-type/C3HC4-t... Potri.009G062600
[exp]
4.00 0.7771
AT1G63690 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE ... Potri.001G103100
[exp]
5.00 0.8646
AT1G32410 Vacuolar protein sorting 55 (V... Potri.001G146600
[exp]
5.00 0.7997
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Potri.015G026100
[exp]
6.78 0.8233
AT3G49490 unknown protein Potri.003G206701
[exp]
14.38 0.8065
AT3G48260 WNK3 with no lysine (K) kinase 3 (.... Potri.015G084600
[exp]
15.90 0.7832
AT4G25230 RIN2 RPM1 interacting protein 2 (.1... Potri.001G124000
[exp]
17.66 0.7603
AT3G47990 SIS3 SUGAR-INSENSITIVE 3 (.1) Potri.012G079600
[exp]
17.88 0.7381
AT5G03330 Cysteine proteinases superfami... Potri.016G094700
[exp]
22.62 0.7884
AT4G03115 Mitochondrial substrate carrie... Potri.014G135530
[exp]
26.51 0.7745

Potri.019G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.