Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58380 540 / 0 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G45820 521 / 0 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G01810 502 / 2e-177 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G07070 498 / 2e-175 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT4G18700 455 / 6e-158 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G25110 454 / 2e-157 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT4G30960 447 / 2e-155 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G10930 447 / 3e-155 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G45810 444 / 1e-153 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G30270 431 / 1e-148 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133500 [exp] 590 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 546 / 0 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 544 / 0 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 516 / 0 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G263500 [exp] 474 / 5e-166 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.006G186200 [exp] 466 / 6e-163 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 457 / 2e-159 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G019900 [exp] 454 / 4e-158 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.011G067600 [exp] 437 / 9e-150 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042229 [exp] 568 / 0 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 533 / 0 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 527 / 0 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10029054 [exp] 509 / 8e-180 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10034212 [exp] 508 / 1e-179 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10007283 [exp] 473 / 3e-165 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10008582 [exp] 470 / 4e-165 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 466 / 1e-162 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 464 / 6e-162 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10012893 [exp] 458 / 2e-159 AT5G58380 446 / 3e-154 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.019G048800.1 pacid=42774029 polypeptide=Potri.019G048800.1.p locus=Potri.019G048800 ID=Potri.019G048800.1.v4.1 annot-version=v4.1 ATGGAAAATAAGGGGAATGTGTTGATGGAAAGGTATGATTTTGGGAGATTGCTTGGCCAAGGAAACTTTGCTAAGGTTTACTATGGGAGAAACCTGAAAA CTGGCCAGAGTGTGGCCATCAAGGTCATTGACAAAGAGAAGGTTCTGAAAGTAGGACTGATGGATCAGATCAAGCGAGAGATATCTGTCATGAGATTGGT TAAACATCCAAACGTACTGCAACTATACGAGGTTATGGCCACCAAAAACAAAATTTACTTTGTGATAGAATATGCTAAAGGTGGCGAACTCTTTAATAAG GTAGCAAAAGGGAGGCTCAAGGAAGATGTTGCTAGGACGTATTTTCAACAGTTAATCAGTGCAATTGATTTTTGTCATAGCAGAGGTGTTTCTCACCGAG ATTTGAAACCAGAAAACTTATTACTGGATGAGAATGGAGGTTTGAAGGTGTCAGATTTTGGTTTGAGTGCTGCTGCTGAGTCTAGGCGTCAAGATGGTTT GCTGCACACTACTTGTGGAACTCCTGCATATGTGGCTCCTGAAGTTATTTATAGGAAAGGCTATGACGGGGCCAAAGCTGACATCTGGTCTTGTGGGGTG GTCTTGTTTGTTTTGCTGGCCGGTTATCTCCCATTTCATGATGCAAATCTGATTTTGATGTACCGAAAAATAAGAAAGGCAGAGTACAAGTTCCCTAACT GGTTTTCACCTGAAATGTGCAGGCTGCTATCAAGGATGCTTGATCCTAACCCAAAAACTAGAATATCCATCACAAAAATAATGGAAAATTCCTGGTTTAG AAAAGGACTCGATTCTAATGCTGTTACAATTAAAAATGAAGTTACTGGATTGGATCCTTTGGCTGCTGATGTGACATTTGACTCTTGTGAGAATGATAGT GCTCCTGCTGAAGCCAAGAAAGAGTTGAGCCAGCCTACCAGTTTGAATGCCTTTGATATCATATCTCTTTCATCTGGGTTTGACTTATCTGGTTTGTTTG CGAAAGATAACCAGAAGAAAGAAAAAAAGTTCATATCAATGCACTCTGCCTCAACTATTACATCCAAGCTGGAGGACATTGCTAGGCTTCTGAAGCTAAA AGTAAAGAAGAAAGATGGAGGGCTGTTGAAGTTGGAGGGATCAGAGAAAGGTAGGAAAGGGGCGTTGTCCATTGATACAGAAATATTTGAGTTCACTCCA TCTTTTCATTTGGTAGAGGTGAAAAGTTCTAGTGGTGATACCCTGGAATACCTACAGATACTGGAAAATGGTATAAGACCAGCTCTAAAGGACATTGTTT GGGCATGGCAAGGTGAGTAG
AA sequence Show only first row Show all	>Potri.019G048800.1 pacid=42774029 polypeptide=Potri.019G048800.1.p locus=Potri.019G048800 ID=Potri.019G048800.1.v4.1 annot-version=v4.1 MENKGNVLMERYDFGRLLGQGNFAKVYYGRNLKTGQSVAIKVIDKEKVLKVGLMDQIKREISVMRLVKHPNVLQLYEVMATKNKIYFVIEYAKGGELFNK VAKGRLKEDVARTYFQQLISAIDFCHSRGVSHRDLKPENLLLDENGGLKVSDFGLSAAAESRRQDGLLHTTCGTPAYVAPEVIYRKGYDGAKADIWSCGV VLFVLLAGYLPFHDANLILMYRKIRKAEYKFPNWFSPEMCRLLSRMLDPNPKTRISITKIMENSWFRKGLDSNAVTIKNEVTGLDPLAADVTFDSCENDS APAEAKKELSQPTSLNAFDIISLSSGFDLSGLFAKDNQKKEKKFISMHSASTITSKLEDIARLLKLKVKKKDGGLLKLEGSEKGRKGALSIDTEIFEFTP SFHLVEVKSSSGDTLEYLQILENGIRPALKDIVWAWQGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G048800 [exp]	0	1
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109600 [exp]	1.41	0.9483
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	2.82	0.9192
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.001G115600 [exp]	3.00	0.9034	Pt-ACR7.1
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076101 [exp]	4.69	0.8999
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.014G147000 [exp]	5.47	0.9166	Pt-RIC2.1
AT3G16200			unknown protein		Potri.001G186200 [exp]	5.91	0.9065
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.009G053900 [exp]	7.14	0.8914
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.004G130300 [exp]	8.36	0.9079
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Potri.008G195500 [exp]	9.59	0.8533
AT5G55950			Nucleotide/sugar transporter f...		Potri.001G370800 [exp]	9.79	0.9056

Compare expression of checked genes

Potri.019G048800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.