Plant FIBer expression Database

Potri.019G048900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40490 633 / 0 HEME2 Uroporphyrinogen decarboxylase (.1)
AT3G14930 411 / 2e-142 HEME1 Uroporphyrinogen decarboxylase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G390800
[exp]
402 / 4e-139 AT3G14930 627 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3)
Potri.013G083200
[exp]
385 / 4e-135 AT2G40490 319 / 3e-109 Uroporphyrinogen decarboxylase (.1)
Potri.011G109800
[exp]
240 / 3e-77 AT3G14930 386 / 2e-134 Uroporphyrinogen decarboxylase (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012892
[exp]
681 / 0 AT2G40490 621 / 0.0 Uroporphyrinogen decarboxylase (.1)
Lus10030544
[exp]
680 / 0 AT2G40490 619 / 0.0 Uroporphyrinogen decarboxylase (.1)
Lus10011170
[exp]
407 / 1e-140 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3)
Lus10043079
[exp]
406 / 2e-139 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0160 Methionine_synt PF01208 URO-D Uroporphyrinogen decarboxylase (URO-D)
Representative CDS sequence
>Potri.019G048900.2 pacid=42774273 polypeptide=Potri.019G048900.2.p locus=Potri.019G048900 ID=Potri.019G048900.2.v4.1 annot-version=v4.1
ATGTCTTCCATTTGCAGCTTTACTTCCTCCATTTCCTCAATCTCTCCTTTTACATCTCCAAGAAAGTCTCTCAACTATAACAACAAGTACACTCCAATCA
TCCACTCTTCCCTTCAAGGAACTGTGGCCGAACCTAAAGCATCCTCTGTTGCCGAGCCCCTTTTGCTTAATGCCGTTAGAGGAGAAGATGTTGAAAGACC
TCCCGTTTGGCTTATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAATCATCTGTGAGAAGCATCCTTCATTTCGTGAAAGATCAGAAAATGTTGAT
CTTGTAGTGGAAATTTCTCTACAGCCATGGAAAGTTTTCAGGCCTGATGGAGTCATTTTATTCTCTGACATTCTTACACCACTTTCTGGGATGAATATCC
CTTTTGACATTGTGAAAGGCAAGGGTCCTGTCATATTCAATCCTTTGCGCACAGCTGATGATGTTGATCAAGTTAGGGAATTTGTTCCTGAGGAATCAGT
TCCATATGTCGGGGAAGCATTGACAGTCCTGAGAAAAGAGGTAGAAAACAAAGCTGCAGTGCTGGGCTTCGTAGGGGCTCCTTTCACCCTGGCTTCATAT
GTAGTGGAAGGTGGTTCATCAAAACACTTTACTAAAATAAAGAGATTAGCTTTCTCCCAGCCCAAGGTTCTCCACGCATTACTTCAGAAATTTGCGACCT
CTATGGCAAAATACATTCAATATCAAGCTGACAGTGGAGCTCAAACTGTTCAAATCTTTGACTCATGGGCCACAGAGCTTAGCCCTGTGGATTTTGAGGA
GTTCAGTCTTCCATACTTGAAGCAGATCGTGGATACTGTGAAACAATCCCATCCAAATCTCCCGCTAATCCTTTATGCTAGTGGATCTGGAGGCTTGCTT
GAGCGGCTAGCTTTGACAGGTGTAGATGTTGTAAGCTTGGATTGGTCAGTTGATATGGCTGAAGGTAGGAAGCGATTGGGACCTGATGTAGCTGTTCAGG
GGAATGTAGATCCTGGTGTTCTATTTGGGTCAAAGGAATTCATAACTAATCGGATATATGATGTTGTCAAGAAAGCCGGTAAAGGAAAACATATACTTAA
TCTTGGTCATGGAATTGTAGTCGGCACACCTGAGGAGAATGTTGCGCACTTTTTCGAGGTTGCTAAAGGAATCAGATACTAA
AA sequence
>Potri.019G048900.2 pacid=42774273 polypeptide=Potri.019G048900.2.p locus=Potri.019G048900 ID=Potri.019G048900.2.v4.1 annot-version=v4.1
MSSICSFTSSISSISPFTSPRKSLNYNNKYTPIIHSSLQGTVAEPKASSVAEPLLLNAVRGEDVERPPVWLMRQAGRYMKSYQIICEKHPSFRERSENVD
LVVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFNPLRTADDVDQVREFVPEESVPYVGEALTVLRKEVENKAAVLGFVGAPFTLASY
VVEGGSSKHFTKIKRLAFSQPKVLHALLQKFATSMAKYIQYQADSGAQTVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKQSHPNLPLILYASGSGGLL
ERLALTGVDVVSLDWSVDMAEGRKRLGPDVAVQGNVDPGVLFGSKEFITNRIYDVVKKAGKGKHILNLGHGIVVGTPEENVAHFFEVAKGIRY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40490 HEME2 Uroporphyrinogen decarboxylase... Potri.019G048900
[exp]
0 1
AT3G01480 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cy... Potri.001G351400
[exp]
4.00 0.9572
AT5G03940 SRP54CP, CPSRP5... SIGNAL RECOGNITION PARTICLE 54... Potri.016G078600
[exp]
4.24 0.9581
AT4G02530 chloroplast thylakoid lumen pr... Potri.006G067600
[exp]
5.65 0.9603
AT3G46780 PTAC16 plastid transcriptionally acti... Potri.001G244800
[exp]
5.65 0.9591
AT5G46110 TPT, APE2 triose-phosphate ⁄ phosp... Potri.011G057800
[exp]
7.48 0.9509 APE2.1
AT1G08520 V157, ALB1, ALB... PIGMENT DEFECTIVE EMBRYO 166, ... Potri.009G049400
[exp]
8.71 0.9395 CHLD.1
AT1G72640 NAD(P)-binding Rossmann-fold s... Potri.003G063800
[exp]
11.22 0.9532
AT2G42220 Rhodanese/Cell cycle control p... Potri.006G059200
[exp]
12.72 0.9537
AT5G08280 HEMC hydroxymethylbilane synthase (... Potri.005G091600
[exp]
14.89 0.9302
AT1G80380 P-loop containing nucleoside t... Potri.003G058500
[exp]
15.49 0.9540

Potri.019G048900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.