Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10970 510 / 0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G11570 102 / 4e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G38740 42 / 0.0003 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104366 [exp] 106 / 1e-25 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G127100 [exp] 103 / 1e-24 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.014G043500 [exp] 44 / 0.0001 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029053 [exp] 539 / 0 AT3G10970 539 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10034213 [exp] 534 / 0 AT3G10970 537 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10002002 [exp] 99 / 6e-23 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10035494 [exp] 98 / 1e-22 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.019G049000.1 pacid=42774162 polypeptide=Potri.019G049000.1.p locus=Potri.019G049000 ID=Potri.019G049000.1.v4.1 annot-version=v4.1 ATGAAGTGCCGTTGCAGCAATTTTAAAAGCGTTTCATCATCTTCATCTTCTACTTCTTCTCTGCTCCTTCCACCTTCACCCTCCTCTTCTGGTCTTCCTC ACTCGCTCTTTTCCCACTCTAAGCTCAAACTTCCGAAATTAAAGGCAAATCATCGTTTGGTGATCAAGAATGCTTGTGGGTTCGATAATAATGACGGGCT TCCCGTTTCTCCTAAAAAGCTCTTCATGCAAGAGGCAATTGGAGCAGAATATGGAGAAGGGTTTGAGACATTTAGACAGGATGGGCTTTTAAAGGTTGAT GTGGATTTTTTGAATGATAAACTGCAAGAAGGTTTCCTTCATCGGGTACGCTATGCCATGAAACCAGATGAAGCCTATGGTCTTGTTTTTTCTTGGGACA ATGTTGTGGCTGATACTCGATCAATAAAGTTGAATGTGTGGAAGCAGCTTGCAATTGAAGAAGGAAAGGAAATTCCTGAAGATGAGCTTGCTCAAAGACT GATGCTATATGCAGATGCGGATCACATACTGCACAAGGGATTGCTCTGGGAGACAGCAGAAAGTGAAGTGGTTAGATTGAAGTTACGACTATCCCAGTTG TATCATGCTAATCTACTTGGGCTTAGAGAACCCATTGAGGGGCTGGAAGAATGGCTGGATGCAGTAAGTAGAGTTCATATACCCTGTGCTGTTGTTTCAT GTCTTGATCGAATAAACATGGTAGGTGCCCTGGAGCGTATGGGTCTCAAAAAGTATTTCCAGGCTATTGTGTCTGAGGAAGATGGCATGGAGTCAATAGC GCATAGATTCCTTTCTGCAGCTATGAAGCTGGACCGCAAACCATCCAAGTGTGTGGTGTTTGAAGATGACCCCAGGGGCATAGCTGCTGCTCATAACTGT ACTATGATGGCTGTAGGATTAATTGGTGCACATCCTGCGTATGATCTGGTGCAGGCTGATCTTGCTGTTGCAAGCTTCAACGAACTTTCAGTGATCAATC TCCGGAGACTATTTGCTAACAAGGGCTCTACTTTTATGGACCGGCAAAAGGAGATTGTAGAGAAATCTCCTCCGAAGAGAAAGCTATCAGTCGACACCAT ATACTAA
AA sequence Show only first row Show all	>Potri.019G049000.1 pacid=42774162 polypeptide=Potri.019G049000.1.p locus=Potri.019G049000 ID=Potri.019G049000.1.v4.1 annot-version=v4.1 MKCRCSNFKSVSSSSSSTSSLLLPPSPSSSGLPHSLFSHSKLKLPKLKANHRLVIKNACGFDNNDGLPVSPKKLFMQEAIGAEYGEGFETFRQDGLLKVD VDFLNDKLQEGFLHRVRYAMKPDEAYGLVFSWDNVVADTRSIKLNVWKQLAIEEGKEIPEDELAQRLMLYADADHILHKGLLWETAESEVVRLKLRLSQL YHANLLGLREPIEGLEEWLDAVSRVHIPCAVVSCLDRINMVGALERMGLKKYFQAIVSEEDGMESIAHRFLSAAMKLDRKPSKCVVFEDDPRGIAAAHNC TMMAVGLIGAHPAYDLVQADLAVASFNELSVINLRRLFANKGSTFMDRQKEIVEKSPPKRKLSVDTIY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10970			Haloacid dehalogenase-like hyd...		Potri.019G049000 [exp]	0	1
AT5G58070		ATTIL	temperature-induced lipocalin ...		Potri.018G110800 [exp]	5.74	0.9383
AT5G45170			Haloacid dehalogenase-like hyd...		Potri.015G112500 [exp]	6.08	0.9559
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	6.48	0.9554
AT4G05160			AMP-dependent synthetase and l...		Potri.004G102000 [exp]	8.00	0.9303	Ptr4CL8
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	8.48	0.9498
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.010G248700 [exp]	8.83	0.9518
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	11.61	0.9496
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	12.64	0.9534	NAP6.2
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Potri.008G101900 [exp]	15.00	0.9547	Pt-RFC3.1
AT3G54360			zinc ion binding (.1)		Potri.003G189400 [exp]	16.12	0.9485

Compare expression of checked genes

Potri.019G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.