Plant FIBer expression Database

Potri.019G049100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05330 139 / 2e-41 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2), HMG-box (high mobility group) DNA-binding family protein (.3)
AT5G23420 63 / 4e-12 HMGB6 high-mobility group box 6 (.1.2)
AT1G20696 41 / 7e-05 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3)
AT1G20693 39 / 0.0004 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
AT4G35570 39 / 0.0004 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G000900
[exp]
52 / 3e-08 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000418
[exp]
151 / 3e-46 AT5G05330 109 / 1e-29 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2), HMG-box (high mobility group) DNA-binding family protein (.3)
Lus10017797
[exp]
148 / 3e-41 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Lus10041009
[exp]
49 / 6e-07 AT5G23420 178 / 1e-55 high-mobility group box 6 (.1.2)
Lus10012252
[exp]
39 / 0.0004 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
Lus10016025
[exp]
39 / 0.0006 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.019G049100.1 pacid=42773623 polypeptide=Potri.019G049100.1.p locus=Potri.019G049100 ID=Potri.019G049100.1.v4.1 annot-version=v4.1
ATGGGGAACCCGCCAAGAACCCGCAAAAGGGTCCGTGGAATCCGTCGTGCTCCTGATGGAAGTGCCTTCGAGAACTGCAACAATTGTGGGGTTTTGGTGG
CAATCGCTTTGGCTGATTTGCATGAATGTGAAGCTGGAACCAAAAACAATGTGAAGAGATTCAAAGGCTTGGATGGAAAACAAAACGTTGTCCAACAAAG
CTTTTGTGACCAACCCAGATCGCCTTTCCGTCTCTTCATGGAAGATTTCATGAAGACTGGCAAGATTTGGAACATAATTGATATTGATCGTAAAGGGTTC
GAGACTTGGAGGAACATGTCAAAGGAGGAGAGGCAACCATACATCACGAGAGCTGATGAGATTAACTCGGCTCATGTTAAATGTTTGATTCAAGATATTG
ATCATATGTCAGAGGTAAACGATGAGGCAGATTCAGCAATAGTTGGGAAGTTTGATCCGTTCTATGAACACTATGAACACTGCGACAACTCTGACAGCTG
TTATAGTTTTCAGTACAAAGATTTTGAGAGCTTGAACACATGGGAATGGGAAATGGTGAGAACATGGATGGCTAAGAGTTCTGGCTGA
AA sequence
>Potri.019G049100.1 pacid=42773623 polypeptide=Potri.019G049100.1.p locus=Potri.019G049100 ID=Potri.019G049100.1.v4.1 annot-version=v4.1
MGNPPRTRKRVRGIRRAPDGSAFENCNNCGVLVAIALADLHECEAGTKNNVKRFKGLDGKQNVVQQSFCDQPRSPFRLFMEDFMKTGKIWNIIDIDRKGF
ETWRNMSKEERQPYITRADEINSAHVKCLIQDIDHMSEVNDEADSAIVGKFDPFYEHYEHCDNSDSCYSFQYKDFESLNTWEWEMVRTWMAKSSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05330 HMG-box (high mobility group) ... Potri.019G049100
[exp]
0 1
AT3G06890 unknown protein Potri.008G221000
[exp]
3.46 0.8284
AT2G40620 bZIP AtbZIP18 Basic-leucine zipper (bZIP) tr... Potri.013G091400
[exp]
4.47 0.8087
AT1G02180 ferredoxin-related (.1) Potri.002G136000
[exp]
5.00 0.8069
AT5G20810 SAUR-like auxin-responsive pro... Potri.018G063400
[exp]
11.22 0.8008
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.005G058501
[exp]
14.83 0.7564
AT2G20390 unknown protein Potri.014G193150
[exp]
14.86 0.7657
AT1G80530 Major facilitator superfamily ... Potri.003G016725
[exp]
15.55 0.7533
AT5G23300 PYRD pyrimidine d (.1) Potri.007G074101
[exp]
15.65 0.7434
AT5G65550 UDP-Glycosyltransferase superf... Potri.008G024801
[exp]
17.74 0.7562
Potri.005G221050
[exp]
17.88 0.7626

Potri.019G049100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.