Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40480 351 / 1e-114 Plant protein of unknown function (DUF827) (.1) AT3G56270 199 / 2e-57 Plant protein of unknown function (DUF827) (.1) AT2G38370 89 / 2e-18 Plant protein of unknown function (DUF827) (.1) AT3G51720 68 / 5e-12 Plant protein of unknown function (DUF827) (.1) AT4G33390 66 / 5e-11 Plant protein of unknown function (DUF827) (.1) AT2G26570 65 / 1e-10 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT1G45545 51 / 2e-06 Plant protein of unknown function (DUF827) (.1) AT5G42880 50 / 4e-06 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133300 [exp] 286 / 9e-89 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 62 / 7e-10 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 60 / 4e-09 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034211 [exp] 432 / 3e-146 AT2G40480 385 / 1e-128 Plant protein of unknown function (DUF827) (.1) Lus10029055 [exp] 253 / 2e-78 AT2G40480 226 / 6e-69 Plant protein of unknown function (DUF827) (.1) Lus10025249 [exp] 219 / 1e-63 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1) Lus10009099 [exp] 217 / 2e-61 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10029056 [exp] 140 / 2e-39 AT2G40480 124 / 1e-34 Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 56 / 7e-08 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 54 / 3e-07 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [poplar] [flax] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Potri.019G049201.1 pacid=42774549 polypeptide=Potri.019G049201.1.p locus=Potri.019G049201 ID=Potri.019G049201.1.v4.1 annot-version=v4.1 ATGACTGAGCCTGAGCCTGAGTCTCCATACTCTGTTGCTGAAGCGGTTCCCGGCACGCCAGGGATCCGGGAAATAAGGCCCGAAAAGGGTTCTGAGAATT TCAGGTTTTGCAATGAACAGAATGGAAATGAAGGTAACCAGGGGACAAGGAAGGTTGGTTTGAGAGCAGAGATCGACACGTCTCCTCCGTTTGGATCGGT CAAGGAGGCTGTGACACGGTTCGGTGGAAGCGGGCCATGGGTGCCTTATTACTATAGGATTGGAGAAAGTTATGGCGTTGAGGATATCGACATAAAAAAG GTGGAGGAGCAAGCAGCAGAATTGGAGAAGCATCTGATTGTGAAAGAATTGGAAACACTCGATGTCCTTGAAGAACTTGGAACGACAAAAAGGGTTGTTG AAGAGTTGAAGCAGCAGCTGCAAAAGGAAGCGCTTAGATGCATGACAGTTCCTGATGAACCGATGTCAAGTCCTGCTATCAAAGAAATGAACAAGGGAAA CTATAGCTTTCACGTCAACAACAGCGAACAGAGGTTAATAAGCTTAAGCCCTTGCCCTACGGCATCGCCTGATCTGATCTTAATGGAGTTGAAGCAAGCG AAATTGAACCTTGGTAAAACCATTAACGACCTTGGGGTGATTCAAACTTCTGTTGAGTCTTTGAATAAGAAAATGAAGAAAGAGAAAACCTTACTCAAAA AGACCCGTGAGAGGCTAACATCAAAATTTGCAGGGGGGTTATCTCTGGAGGAAGAGCTGAAGCAAGCAAGAACGAAGCCGCATATTGCAGATGATGTTGA AACTGATTACAAGGCAGGGTATTTAATGAAAATGGATGAAGTCCAAAAAACGGAAGTTTTAAAAGGAATGTTAGCTGAAAACATCAAGACTAACATCAGA ACTGCTGAATTGAGGTTGCTGGCAGCCAAGAAGATGGAAGAAGCAGCAAGAGCAGCAGAAGCTGTTGCCCTGGCAGAAATCAAGGCTCTATCAACTGATG AGAGCTCATCGGGATATGCCTTGCCAGAACCAGAGAAAGTTCCCTCCTTTGAAGCAAGATCTCCTCTAAATCCTAAAGATCAGAAGGCCGAGGAGCTTTC CCAGAAGAAAGTGGAAACTTTGAAGCTTCCAAAGCAAGAAGTTCACTTTACTAAAATGTCTATTCTAAATAAGCTAAGGGAAGCAACGGAAGAAGTTAAA CTAAGCAAACAAGCCTTAGAAGAGGCTCTGAACAAAGTCGAGATGGCCAATAGAAAGCAAGTTGCTGTTGAAGAGGCTATCCGCAAATGGATGCCAGAGG ATGATCAAGTGGGACAGGACGCATATTATCATACCAGGCTTGGTAATTTCCATTTGCATCCATCCGATCAACGGCAGGATTCTCCATTAAATGAAGTGAA CAACCCCAATCTAATTGGTGATGGCCCGAAGCCTGTTCTGAGAACCACAGTTTCGATGAGGGATGTTTTGAGCAGGAAGCAAATTAGAGCGGAAGAATAT GTTGCAGCAAGGCCAGCAGAAGGCGGCACAGAGAGGCAAAAGGTGGCTTTGAGTCAAATGCTTCATGAACTGAGGGAGGATCTAACGTTTCATCCAAGAG TTGAAAAACATGGAGGTGAACAGAAGCAGCAGTTCTATACACAAAGGAGAAAGTTCGGGTTCATTCATATATCGCTGCCCATGACAAAACCAGGCAAGAA AAAGATGCAAGATTTGAACAATATGAAGATGCATTAA
AA sequence Show only first row Show all	>Potri.019G049201.1 pacid=42774549 polypeptide=Potri.019G049201.1.p locus=Potri.019G049201 ID=Potri.019G049201.1.v4.1 annot-version=v4.1 MTEPEPESPYSVAEAVPGTPGIREIRPEKGSENFRFCNEQNGNEGNQGTRKVGLRAEIDTSPPFGSVKEAVTRFGGSGPWVPYYYRIGESYGVEDIDIKK VEEQAAELEKHLIVKELETLDVLEELGTTKRVVEELKQQLQKEALRCMTVPDEPMSSPAIKEMNKGNYSFHVNNSEQRLISLSPCPTASPDLILMELKQA KLNLGKTINDLGVIQTSVESLNKKMKKEKTLLKKTRERLTSKFAGGLSLEEELKQARTKPHIADDVETDYKAGYLMKMDEVQKTEVLKGMLAENIKTNIR TAELRLLAAKKMEEAARAAEAVALAEIKALSTDESSSGYALPEPEKVPSFEARSPLNPKDQKAEELSQKKVETLKLPKQEVHFTKMSILNKLREATEEVK LSKQALEEALNKVEMANRKQVAVEEAIRKWMPEDDQVGQDAYYHTRLGNFHLHPSDQRQDSPLNEVNNPNLIGDGPKPVLRTTVSMRDVLSRKQIRAEEY VAARPAEGGTERQKVALSQMLHELREDLTFHPRVEKHGGEQKQQFYTQRRKFGFIHISLPMTKPGKKKMQDLNNMKMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40480			Plant protein of unknown funct...		Potri.019G049201 [exp]	0	1
AT1G80690			PPPDE putative thiol peptidase...		Potri.001G047800 [exp]	1.00	0.9713
AT2G36570			Leucine-rich repeat protein ki...		Potri.006G117200 [exp]	1.41	0.9557
AT3G42800			unknown protein		Potri.018G065000 [exp]	2.82	0.9434
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Potri.008G020900 [exp]	3.74	0.9300
AT5G06470			Glutaredoxin family protein (....		Potri.006G201300 [exp]	4.89	0.9281
AT5G02420			unknown protein		Potri.009G030200 [exp]	4.89	0.9253
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.001G240900 [exp]	5.38	0.9114	Pt-EXPA6.2
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.015G122700 [exp]	5.91	0.9372
AT1G12380			unknown protein		Potri.015G130800 [exp]	8.24	0.9044
AT4G39730			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G107100 [exp]	8.48	0.9276

Compare expression of checked genes

Potri.019G049201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.