Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27270 1177 / 0 EMB976 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 201 / 1e-52 PGR3 proton gradient regulation 3 (.1) AT5G55840 184 / 5e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 172 / 6e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19440 167 / 3e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39710 162 / 5e-41 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 160 / 5e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 159 / 1e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 157 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 156 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264800 [exp] 229 / 9e-62 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G368700 [exp] 192 / 1e-49 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 182 / 1e-46 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 181 / 2e-46 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G036400 [exp] 177 / 1e-44 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 171 / 2e-43 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123900 [exp] 172 / 3e-43 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G005100 [exp] 166 / 8e-42 AT4G30825 1121 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 164 / 4e-41 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003465 [exp] 729 / 0 AT5G27270 665 / 0.0 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015739 [exp] 490 / 2e-162 AT5G27270 485 / 2e-161 EMBRYO DEFECTIVE 976, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 207 / 1e-54 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 187 / 1e-48 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037968 [exp] 182 / 1e-46 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 164 / 4e-41 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 164 / 8e-41 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 154 / 6e-38 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 153 / 7e-38 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 151 / 2e-37 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.019G049400.2 pacid=42773647 polypeptide=Potri.019G049400.2.p locus=Potri.019G049400 ID=Potri.019G049400.2.v4.1 annot-version=v4.1 ATGAAGATCATCATCCTCGAATCCCCGTTTCTCCCTCCCCCTCCCAATTCAAAAACAAAGCCAAAACCAAAGTCCATAAACCCCAACAAAGTCCCTATTA AATCCTCAATCCACCCAGACCCTTGGTCCTTAAGCGACGGAAACAACATATCTAAACCCAAACCCAAATCCAAAAACCCCAAAAACCCGTTATCGGATGA CAACGCCAGGCGCATGATCATAGCCAGAGCGCGATACTTGAGCTTGTTGCGTAAGCACCAAGGCCCGCAAGCTCAAACACCAAAGTGGATAAAGAGAACT CCTGAACAGATGGTGATGTATTTGGAGGATGATAGAAATGGGCATCTCTATGGGAAGCATGTTGTGGCAGCTATAAAGAGAGTGAGGGGATTGGCTGGCA AGAAAAATGAAGAGAGGGATATGAGGTTGCTTATGAGTGGGTTTGTGGGTAAGTTGAGTTTTAGAGAAATGTGTGTTGTTTTAAAAGAGCAGAAAGGGTG GAGGGAGGCCAGAGACTTCTTTTCCTGGATGAAATTGCAGTTAAGCTATCATCCGAGCGTTATTGTCTATACGATTCTTTTGCGAATATATGGGCAAGTT GGAAAGATCAAGTTAGCTGAACAAACCTTCTTGGAGATGCTTGAAGTAGGATGTGAACCGGATGAAGTTGCATGCGGCACCATGTTGTGTTCTTATGCCA GATGGGGACACCATAAGGCTATGTTTTCGTTTTATTCAGCTATAAAAGAAAGAGGGATTGTAGTCTCTATTGCAGTTTACAACTTTATGCTGTCTTCATT GCAGAAGAAATCACTTCACGGAAAGGTTATAGTATTGTGGAGGCAGATGGTTGATAAAAGGGTTGCACCCAATAATTTTACTTATACAGTGGTTATTAGT TCACTTGTCAAGGAAGGTCTTCACAAGGAGGCTTTCAAGACTTTCAATGAGATGAGGACCATGGGGCTGGTGCCTGAGGAAGTAATATATAGCTTGCTTA TTACTGTGAGTACCAAAAACAGTAACTGGCATGAAGCATTGAAATTGTACGAGGACATGAGATCTCACAGAATAGTTCCGAGTAAATTCACCTGTGCTTC ACTTCTGACTATGTATTACAAAATCAAAGACTATTCTAAAGCCCTTTCCCTCTTTATACAAATGCAGAGCAAGAACATCGCAGCTGATGAAGTTATATAT GGATTGCTCATAAGAATATATGGCAAACTTGGTCTCTATGAGGATGCGCAAAAAACATTTGAAGAGACTGAGCGATCAGGTCTACTGAGTAATGAGAAAA CATATTTAGCAATGGCACAAGTGCATCTCAGTTCAGGAAACTTTGAGAAAGCCTTGAGTGTTATTGAAGTGATGAAATCTAGAAACATCTGGTTATCACG ATTTGCTTATATTGTGCTGTTGCAGTGTTATTGTATGAAAGAAGATTTGGACTCTGCTGAAGTTACATTTCAAGCTTTATCAAAGATAGGATGTCCTGAT GCTGGTTCTTGTAGTGACATAATTAATTTATATGTTAGACTTGGCTTGACTGAAAAGGCCAAGGATTTTATTGTCCACATAAGGAAAGACCTAGTAGATT TTGATGAGGAGCTTTTCAATACAGTTATTAAAGTATTTTGCAAGGAAGGCATGTTAAAAGATGCTGAACAATTGGTATATGAGATGGGCACAAATGCATC ATTCAAGGATAATAGATTTTTTAAGACATTTTCTAATGTTATGTATGGAGAAAATAAGGAACTGGAAAACATTATGGTTTCTGCTGACACCACGGCTCTG GGGCTTATCCTGAGTTTATACTTGGAAAATGGCAATTTCAACAAGACAGAAGAATTCCTGAAGTTGATACTTGAGGCTGGTAGTGGCTTGTCTGTGGTGA GCCAACTAGTAAACAGCTTTATTAGAGAAGGTGATCTATTCAAAGCGGAGGCAGTAAATGGTCAATTAATCAAGCTAGGCTCTAAACTAGAGGATGAAAC AATTGCTTCTTTGATTAGTGCATATGGGAGACAAAACAAGCTGAAACAGGCCCAGGAGGTCTTTGCAGCAGTTGCAGATTCTCCAATATTGGGAAACCCA ATAATTAACTCAATGATTGATGCATGTGTCAAATGTGGTAAATTTGAGGAGGCATACTTACTTTATGAAGAAGTGGCACAAAGAGGGCACAATCTTGGTG CTGTTGGTATTGGCATGGTTGTGAATGCTTTGACCAATTCTGGCAAACATCCAGAGGCTGAAAATATTATTTGCAGGAGTATTCAGGACAGGATGGAGCT TGATACTGTGGCGTACAATATTTTTATCAAGGCAATGCTAGAAGCAGGTAGATTGCATTTTGCAACCAGCATCTATGAGCACATGCTGTTATTGGGATTC ACTCCATCAATTCAGACATATAACACTATGATTAGTGTATATGGACGTGGTCGAAAGTTGGATAAGGCTGTGGAGGTGTTCAATACAGCTTGCAGCTTGG GTGTATCTTTGGATGAAAAGGCATACATGAATATGATTTACTATTATGGCAAGGCTGGTAAGAGACATGAGGCATCTCTCCTGTTTGCCAAAATGCAGGA AGAGGGGATAAAACCTGGGGTGGTTAGCTACAATGTAATGGCCAAAGTATATGCCATGTCAGGACTTTATCATGAAGTTGAAGAACTATTCAAAGTTATG GAGAGAGATGGTTGTCCACCAGACTCGTTCACATACCTCTCCCTTGTTCAAGCTTATTCAGAGAGTTCGAAATGCTTGGAGGCAGAGGAAACAATAAATG CCATGCAGAAGAAAGGCATCCCTCCTTCCTGTGCCCATTTTAAGCATTTGCTCTATGCTCTTGTGAAGGCTGGTCTTATGGTGGAAGCAGAAAGGGTGTA TATGGAGCTATTATCGGCTGGTTTAAATCCAGACCTTGTCTGTTGTCGGGCTATGCTTAGAGGTTACATGGACTATGGACATGTGGAAAAAGGCATCAAA TTTTATGAACAGATCAGGGAGTTAGTAAAAGCAGACAGATTTATAATGAGTGCAGCTGTGCATCTGTACAAATCAGCTGGAAAGAAACTCGAAGCTGAAG TTCTTTTTGAATCCATGAAGAGTTTGAGGATCTCGTTCCTCAATGAGCTTGAAGTTGGATTGAAGATACAATGCCCCAGCCACGTATCCCAGGTGACCGA CCAAGAGCTCTCAGTTATATGA
AA sequence Show only first row Show all	>Potri.019G049400.2 pacid=42773647 polypeptide=Potri.019G049400.2.p locus=Potri.019G049400 ID=Potri.019G049400.2.v4.1 annot-version=v4.1 MKIIILESPFLPPPPNSKTKPKPKSINPNKVPIKSSIHPDPWSLSDGNNISKPKPKSKNPKNPLSDDNARRMIIARARYLSLLRKHQGPQAQTPKWIKRT PEQMVMYLEDDRNGHLYGKHVVAAIKRVRGLAGKKNEERDMRLLMSGFVGKLSFREMCVVLKEQKGWREARDFFSWMKLQLSYHPSVIVYTILLRIYGQV GKIKLAEQTFLEMLEVGCEPDEVACGTMLCSYARWGHHKAMFSFYSAIKERGIVVSIAVYNFMLSSLQKKSLHGKVIVLWRQMVDKRVAPNNFTYTVVIS SLVKEGLHKEAFKTFNEMRTMGLVPEEVIYSLLITVSTKNSNWHEALKLYEDMRSHRIVPSKFTCASLLTMYYKIKDYSKALSLFIQMQSKNIAADEVIY GLLIRIYGKLGLYEDAQKTFEETERSGLLSNEKTYLAMAQVHLSSGNFEKALSVIEVMKSRNIWLSRFAYIVLLQCYCMKEDLDSAEVTFQALSKIGCPD AGSCSDIINLYVRLGLTEKAKDFIVHIRKDLVDFDEELFNTVIKVFCKEGMLKDAEQLVYEMGTNASFKDNRFFKTFSNVMYGENKELENIMVSADTTAL GLILSLYLENGNFNKTEEFLKLILEAGSGLSVVSQLVNSFIREGDLFKAEAVNGQLIKLGSKLEDETIASLISAYGRQNKLKQAQEVFAAVADSPILGNP IINSMIDACVKCGKFEEAYLLYEEVAQRGHNLGAVGIGMVVNALTNSGKHPEAENIICRSIQDRMELDTVAYNIFIKAMLEAGRLHFATSIYEHMLLLGF TPSIQTYNTMISVYGRGRKLDKAVEVFNTACSLGVSLDEKAYMNMIYYYGKAGKRHEASLLFAKMQEEGIKPGVVSYNVMAKVYAMSGLYHEVEELFKVM ERDGCPPDSFTYLSLVQAYSESSKCLEAEETINAMQKKGIPPSCAHFKHLLYALVKAGLMVEAERVYMELLSAGLNPDLVCCRAMLRGYMDYGHVEKGIK FYEQIRELVKADRFIMSAAVHLYKSAGKKLEAEVLFESMKSLRISFLNELEVGLKIQCPSHVSQVTDQELSVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Potri.019G049400 [exp]	0	1
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Potri.010G068400 [exp]	3.74	0.8509
AT5G45190			Cyclin family protein (.1.2)		Potri.001G081600 [exp]	4.47	0.8241
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	5.47	0.8356
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	8.00	0.8513
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.016G106650 [exp]	8.83	0.8056
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	11.48	0.8081
AT5G57610			Protein kinase superfamily pro...		Potri.018G095800 [exp]	16.24	0.8223
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.012G143900 [exp]	16.30	0.7999
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	16.52	0.8328
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	16.70	0.8279

Compare expression of checked genes

Potri.019G049400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.