Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Ptr4CL4,4CL3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65060 783 / 0 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21240 701 / 0 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 664 / 0 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT3G21230 600 / 0 4CL5 4-coumarate:CoA ligase 5 (.1) AT4G05160 380 / 8e-126 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 333 / 2e-107 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 324 / 6e-104 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G19010 324 / 7e-104 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 321 / 8e-103 ACOS5 acyl-CoA synthetase 5 (.1) AT1G20480 320 / 3e-102 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G169700 [exp] 749 / 0 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 732 / 0 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.001G036900 [exp] 660 / 0 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G188500 [exp] 647 / 0 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.017G112800 [exp] 392 / 1e-130 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 388 / 7e-129 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G055700 [exp] 367 / 4e-120 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.002G012800 [exp] 352 / 1e-114 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 351 / 3e-114 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026143 [exp] 704 / 0 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10008677 [exp] 683 / 0 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10005390 [exp] 678 / 0 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 672 / 0 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10021431 [exp] 369 / 2e-121 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 365 / 8e-120 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 353 / 4e-115 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 352 / 8e-115 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 320 / 5e-102 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10025842 [exp] 319 / 9e-102 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G049500.2 pacid=42774456 polypeptide=Potri.019G049500.2.p locus=Potri.019G049500 ID=Potri.019G049500.2.v4.1 annot-version=v4.1 ATGATGTCCGTGGCCACGGTTGAGCCCCCGAAACCGGAACTCTCCCCCCCACAAAACCAAAACGCACCATCCTCTCATGAAACTGATCATATTTTCAGAT CAAAACTACCAGATATAACCATCTCGAACCACCTCCCTCTGCACGCATACTGCTTTGAAAACCTCTCTGATTTCTCAGATAGGCCATGCTTGATTTCAGG TTCCACGGGAAAAACCTACTCTTTTGCCGAAACTCACCTAATATCTCGAAAGGTCGCTGCTGGGTTATCCAATTTGGGCATCAAGAAAGGCGATGTAATC ATGACCCTGCTCCAAAACTGCCCAGAATTCGTCTTCTCCTTCATGGGTGCTTCCATGATTGGTGCAGTCACCACCACTGTGAACCCTTTCTACACTCCAG GTGAAATATTCAAGCAATTCTCTGCTTCTCGTGCGAAACTGATTATCACCCAGTCTCAACATGTGAACAAGCTAAGAGATAGTGATTGCCATGAAAACAA CCAAAAACCGGAGGAAGATTTCATAGTAATCACCATTGATGACCCACCAGAGAACTGTCTACATTTCAATGTGCTTGTTGAGGCTAACGAGAGTGAAATG CCAACAGTTTCAATCCATCCGGATGATCCTGTGGCATTACCATTCTCTTCAGGGACAACAGGGCTCCCAAAAGGAGTGATACTGACTCACAAGAGCTTGA TAACAAGTGTGGCTCAACAAGTTGATGGAGAGATCCCAAATTTATACTTGAAACAAGATGATGTCGTTTTATGCGTTTTACCTTTGTTTCACATCTTTTC ATTGAACAGCGTGTTGTTATGCTCGTTGAGAGCCGGTTCTGCTGTACTGTTAATGCAAAAGTTTGAGATCGGATCACTGCTAGAGCTCATTCAGAAACAC AATGTTTCGGTTGCGGCTGTGGTGCCACCACTGGTGCTGGCGTTGGCCAAGAACCCAATGGTGGCGAACTTCGACTTGAGTTCGATCAGGGTAGTCCTCT CAGGGGCTGCGCCACTGGGGAAGGAGCTCGAGGAGGCCCTCAGGAGCAGGGTTCCACAGGCCATCCTGGGACAGGGTTATGGGATGACAGAGGCGGGGCC AGTGCTATCAATGTGCTTAGCCTTCTCAAAGCAACCTTTACCCACCAAGTCTGGATCATGTGGAACGGTGGTTAGAAACGCAGAGCTCAAGGTCATTGAC CCTGAGACCGGTAGCTCTCTTGGTCGCAACCAACCTGGTGAAATCTGCATCCGTGGATCTCAAATCATGAAAGGATATTTGAATGACGCGGAAGCCACGG CAAACATCATAGACGTTGAGGGTTGGCTCCACACTGGAGATATAGGTTATGTCGACGACGACGACGAGATTTTCATTGTTGATAGAGTGAAGGAAATCAT AAAATTCAAAGGCTTCCAGGTGCCGCCCGCGGAGCTTGAGGCTCTCCTTGTAAACCACCCATCAATTGCGGATGCGGCTGTTGTTCCGCAAAAAGATGAG GTTGCTGGTGAAGTTCCTGTCGCGTTTGTGGTCCGCTCAAATGATCTTGACCTTAATGAAGAGGCTGTAAAAGACTACATTGCAAAGCAGGTGGTGTTCT ACAAGAAACTGCACAAGGTGTTCTTCGTTCATTCTATTCCCAAATCGGCTGCTGGAAAGATTCTAAGAAAAGACCTCAGAGCCAAGCTTGCCACAGCCAC CACCATGTCCTAG
AA sequence Show only first row Show all	>Potri.019G049500.2 pacid=42774456 polypeptide=Potri.019G049500.2.p locus=Potri.019G049500 ID=Potri.019G049500.2.v4.1 annot-version=v4.1 MMSVATVEPPKPELSPPQNQNAPSSHETDHIFRSKLPDITISNHLPLHAYCFENLSDFSDRPCLISGSTGKTYSFAETHLISRKVAAGLSNLGIKKGDVI MTLLQNCPEFVFSFMGASMIGAVTTTVNPFYTPGEIFKQFSASRAKLIITQSQHVNKLRDSDCHENNQKPEEDFIVITIDDPPENCLHFNVLVEANESEM PTVSIHPDDPVALPFSSGTTGLPKGVILTHKSLITSVAQQVDGEIPNLYLKQDDVVLCVLPLFHIFSLNSVLLCSLRAGSAVLLMQKFEIGSLLELIQKH NVSVAAVVPPLVLALAKNPMVANFDLSSIRVVLSGAAPLGKELEEALRSRVPQAILGQGYGMTEAGPVLSMCLAFSKQPLPTKSGSCGTVVRNAELKVID PETGSSLGRNQPGEICIRGSQIMKGYLNDAEATANIIDVEGWLHTGDIGYVDDDDEIFIVDRVKEIIKFKGFQVPPAELEALLVNHPSIADAAVVPQKDE VAGEVPVAFVVRSNDLDLNEEAVKDYIAKQVVFYKKLHKVFFVHSIPKSAAGKILRKDLRAKLATATTMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65060		4CL3	4-coumarate:CoA ligase 3 (.1.2...		Potri.019G049500 [exp]	0	1	Ptr4CL4,4CL3.1
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004100 [exp]	1.41	0.9116
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.001G086700 [exp]	1.41	0.9198
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.013G073300 [exp]	3.00	0.9108	F3H1
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Potri.001G161400 [exp]	4.00	0.8937	AHA10.1
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	9.48	0.8900
AT1G12050			fumarylacetoacetase, putative ...		Potri.006G009200 [exp]	10.00	0.8427
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	10.48	0.8927
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Potri.001G291800 [exp]	12.72	0.8711
AT3G06840			unknown protein		Potri.008G219500 [exp]	13.26	0.8627
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.002G259900 [exp]	14.07	0.8369

Compare expression of checked genes

Potri.019G049500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.