Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrCSLD1,CESA3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03050 2021 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1997 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1674 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT1G02730 1482 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 1407 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 1243 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G09870 852 / 0 CESA5 cellulose synthase 5 (.1) AT5G05170 852 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 846 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G25540 840 / 0 CESA10 cellulose synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082200 [exp] 2212 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1696 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 1671 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.001G136200 [exp] 1666 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1651 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.014G125100 [exp] 1488 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1479 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 1387 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1362 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009248 [exp] 1939 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1858 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1672 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1635 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1613 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030453 [exp] 1594 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1479 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10002134 [exp] 1436 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026609 [exp] 1343 / 0 AT3G03050 1326 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 1333 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.019G049700.3 pacid=42774511 polypeptide=Potri.019G049700.3.p locus=Potri.019G049700 ID=Potri.019G049700.3.v4.1 annot-version=v4.1 ATGGCCTCAAGATCATTCAAAGGCACTCGATCAAATCTATCAATTAGCTCGGATGCTGCCGAATCTCACAAACCTCCTCTACCTCAGACCGTGACATTTG GCCGGAGGACTTCCTCTGGTCGCTATATCAGCTACTCAAGGGATGATCTTGATAGTGAACTTGGGAGTAGTGATTTCATGAACTATACAGTGCACTTACC TCCGACCCCTGACAACCAACCCATGGATCCATCTATCTCACAAAGGGTTGAAGAGCAATATGTCTCAAATTCACTCTTTACAGGCGGTTTTAATAGTGTT ACTCGTGCTCATCTCATGGACAAGGTGATTGAATCTGAAGCCAGCCATCCCCAAATGGCTGGTGCTAAGGGATCCTCTTGTGCGATTCCAGGGTGTGATG CCAAGGTGATGAGTGATGAGCGTGGTGTTGATATTCTCCCTTGTGAGTGTGATTTCAAAATATGCCGGGATTGCTTTATCGATGCAGTAAAAATTGGAGG TGGAATTTGCCCTGGTTGCAAGGAGCCTTATAAAAACACCGAATTGGATGAAGTGGTTGTGGACAGTGGAAGGCCTCTTCCACTTCCTCCACCAGGCACA GTGTCCAAAATGGAGAGGAGATTGTCATTGATGAAGTCAACCAAATCAGCGCTGATGAGAAGCCAGACTGGGGACTTTGATCACAATAGGTGGCTCTTTG AAACAAGGGGAACTTATGGGTATGGCAATGCTATCTGGCCAAGTGATGGGGGTTTCGGCAATGGGAATGATGAGGAAGTTGGTGGGCCCAAAGAATTGAT GAACAAGCCATGGAGGCCGCTTACTCGAAAATTAAAGATTCCAGCTGCTATTATCAGTCCATATCGGCTTCTCATTTTTGTTCGGATTGTTATTCTCGCA CTATTCTTGCATTGGAGGATCAGACATCCAAACAACGACGCAATCTGGCTGTGGGGGATGTCAGTGGTTTGCGAGATCTGGTTTGCTTTTTCTTGGCTTT TGGATCAACTTCCAAAGCTATGCCCTATCAATCGTGCTACAGATCTGAATGTGTTGAAAGATAAATTTGAAACACCCAGCCCTAGCAACCCCACTGGTAA ATCTGATCTCCCTGGCGTAGATGTTTTTGTCTCTACTGCAGATCCAGAAAAAGAACCGCCACTTGTCACTGCAAACACCATCTTATCAATTCTAGCAGCT GATTACCCAGTTGAAAAGCTTTCTTGTTATGTTTCCGATGATGGAGGTGCACTTTTAACATTTGAGGCCATGGCCGAAGCAGCGAGTTTTGCAAATGTAT GGGTTCCTTTCTGCCGTAAACATGATATTGAGCCCAGGAATCCAGAATCCTACTTCAGTTTGAAGAGGGATCCTTACAAGAACAAAGTGAAGCAAGATTT TGTCAAGGATCGTCGAAGAGTAAAGCGTGAATATGATGAGTTCAAGGTTCGAATAAATAGCTTGCCTGATTCTATTCGCCGCCGATCTGATGCCTATCAT GCTCGGGAGGAAATCAAGGCCATGAAACTTCAGAAACAGCACAAGGACGATGGACCTGTGGAGAGTGTAAAGATTCCAAAAGCTACATGGATGGCAGATG GTACCCATTGGCCAGGGACTTGGCTGAATCCTTCTCCTGAGCACTCTAGGGGTGACCATGCTGGTATAATACAGGTGATGTTGAAACCTCCCAGCGATGA GCCACTACTTGGAACTTCTGATGAAACTAAGATAATGGACTTTACTGATGTTGATATACGTCTCCCATTGCTTGTTTATGTTTCTCGTGAGAAGCGTCCA GGCTATGATCACAACAAGAAGGCAGGGGCCATGAATGCACTTGTTCGAGCCTCAGCCATTATGTCTAATGGTCCTTTCATTCTTAATCTTGATTGTGATC ACTATATTTACAATTCCCAGGCAATGAGGGAAGGGATGTGTTTCATGATGGATCGAGGAGGTGATCGCCTCTGTTATGTTCAGTTCCCTCAGAGGTTTGA GGGCATAGACCCTTCTGATCGATATGCTAATCACAACACTGTTTTTTTTGATGTGAACATGCGTGCCCTTGATGGTCTAATGGGTCCAGTCTATGTTGGA ACTGGTTGCCTCTTTAGAAGGATTGCTCTTTATGGCTTTGACCCACCACGGGCAAAAGAAGATCACCCAGATTGCTGCAGCTGCTGCTTTGCCCGGCGCA AGAAACATTCCTCAGCTGCGAACACTCCAGAAGAGAACAGGGCTCTGAGAATGGGTGATTATGATGATGAAGAGATGAACCTCTCCCTGCTCCCTAAGAA GTTTGGCAACTCAACATTCCTCATTGACTCAATCCCAGTGACAGAGTTTCAAGGTCGTCCTCTTGCAGATCACCCAGCTGTTAAGAACGGACGCCCACCT GGTGCTCTCACTATTCCCCGTGAGCTTCTTGATGCATCAACTGTTGCAGAGGCAATCAGTGTCATATCTTGCTGGTATGAAGACAAGACTGAGTGGGGAA ATCGAGTTGGGTGGATTTATGGATCTGTTACTGAAGATGTTGTCACTGGGTATAGGATGCACAACAGGGGATGGAAATCAGTTTATTGTGTTACCAAGCG TGATGCCTTCCGTGGCACTGCTCCAATTAACCTCACAGATAGGCTTCATCAAGTTCTCAGGTGGGCTACTGGTTCTGTTGAAATTTTCTTTTCCCGCAAC AATGCCCTCTTAGCCAGCCGTAGAATGAAATTTCTTCAGAGGATAGCATATCTGAACGTTGGCATCTATCCCTTCACTTCGATCTTCCTGATTGTGTACT GCTTCCTCCCTGCACTTTCCCTATTCTCTGGCCAGTTCATTGTTCAGACCCTTAATGTCACTTTTCTTGCTTATCTCCTAATCATCACATTGACTCTATG TTTACTTGCTGTGCTTGAAATCAAATGGTCTGGCATCGACCTAGAGGAGTGGTGGAGGAATGAGCAGTTTTGGTTGATTGGAGGAACCAGTGCCCACCTT GCTGCTGTGCTTCAGGGATTGTTGAAAGTCATTGCAGGGATTGAAATTTCTTTCACCTTGACTTCAAAATCAGGTGGTGATGATGTTGATGATGAGTTTG CTGATCTCTACGTTGTCAAATGGACATCGCTGATGATACCTCCTATTACAATCATGATGGTCAACTTAATTGCAATAGCAGTTGGATTTAGCCGAACAAT TTACAGTGTTATACCGCAGTGGAGTAGATTACTGGGTGGGGTTTTCTTCAGTTTCTGGGTCCTGGCTCATCTCTACCCTTTCGCTAAAGGTCTTATGGGA AGAAGAGGAAGGACACCGACCATTGTTATTGTGTGGTCAGGACTTATTGCAATCACCATCTCTCTCCTCTGGGTGGCAATCAATCCCCCGTCTGGCACCA CCCAAATTGGTGGCTCATTCCAGTTTCCCTGA
AA sequence Show only first row Show all	>Potri.019G049700.3 pacid=42774511 polypeptide=Potri.019G049700.3.p locus=Potri.019G049700 ID=Potri.019G049700.3.v4.1 annot-version=v4.1 MASRSFKGTRSNLSISSDAAESHKPPLPQTVTFGRRTSSGRYISYSRDDLDSELGSSDFMNYTVHLPPTPDNQPMDPSISQRVEEQYVSNSLFTGGFNSV TRAHLMDKVIESEASHPQMAGAKGSSCAIPGCDAKVMSDERGVDILPCECDFKICRDCFIDAVKIGGGICPGCKEPYKNTELDEVVVDSGRPLPLPPPGT VSKMERRLSLMKSTKSALMRSQTGDFDHNRWLFETRGTYGYGNAIWPSDGGFGNGNDEEVGGPKELMNKPWRPLTRKLKIPAAIISPYRLLIFVRIVILA LFLHWRIRHPNNDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLNVLKDKFETPSPSNPTGKSDLPGVDVFVSTADPEKEPPLVTANTILSILAA DYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFSLKRDPYKNKVKQDFVKDRRRVKREYDEFKVRINSLPDSIRRRSDAYH AREEIKAMKLQKQHKDDGPVESVKIPKATWMADGTHWPGTWLNPSPEHSRGDHAGIIQVMLKPPSDEPLLGTSDETKIMDFTDVDIRLPLLVYVSREKRP GYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLMGPVYVG TGCLFRRIALYGFDPPRAKEDHPDCCSCCFARRKKHSSAANTPEENRALRMGDYDDEEMNLSLLPKKFGNSTFLIDSIPVTEFQGRPLADHPAVKNGRPP GALTIPRELLDASTVAEAISVISCWYEDKTEWGNRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRN NALLASRRMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLAYLLIITLTLCLLAVLEIKWSGIDLEEWWRNEQFWLIGGTSAHL AAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYVVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMG RRGRTPTIVIVWSGLIAITISLLWVAINPPSGTTQIGGSFQFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.019G049700 [exp]	0	1	PtrCSLD1,CESA3.2
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	2.82	0.8031	Pt-ACA1.1
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	6.32	0.7839
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.002G216800 [exp]	6.92	0.7475	Pt-RPM1.1
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.011G131700 [exp]	7.48	0.7536
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	8.00	0.7735
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.008G213500 [exp]	9.00	0.7397
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Potri.005G252000 [exp]	12.00	0.7284
AT1G68710			ATPase E1-E2 type family prote...		Potri.008G111200 [exp]	12.48	0.7567
AT1G32120			unknown protein		Potri.001G132800 [exp]	13.96	0.6932
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.004G089400 [exp]	15.74	0.6973

Compare expression of checked genes

Potri.019G049700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.