Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16890 694 / 0 Exostosin family protein (.1) AT2G35100 237 / 2e-72 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT5G44930 214 / 5e-64 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT1G67410 211 / 1e-62 Exostosin family protein (.1) AT1G74680 211 / 2e-62 Exostosin family protein (.1) AT3G03650 204 / 1e-59 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT3G45400 200 / 4e-58 exostosin family protein (.1) AT1G34270 198 / 1e-57 Exostosin family protein (.1) AT5G22940 103 / 2e-23 F8H FRA8 homolog (.1) AT2G28110 103 / 2e-23 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G124600 [exp] 245 / 3e-75 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 235 / 2e-71 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.008G034500 [exp] 215 / 3e-64 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.019G086800 [exp] 209 / 1e-61 AT1G34270 655 / 0.0 Exostosin family protein (.1) Potri.002G210000 [exp] 209 / 1e-61 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.013G116200 [exp] 205 / 3e-60 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.013G067400 [exp] 202 / 8e-59 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.019G044600 [exp] 191 / 9e-55 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.009G006500 [exp] 92 / 1e-19 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039145 [exp] 703 / 0 AT5G16890 679 / 0.0 Exostosin family protein (.1) Lus10013787 [exp] 689 / 0 AT5G16890 673 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 231 / 2e-70 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 232 / 2e-69 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10015791 [exp] 227 / 1e-68 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 226 / 3e-68 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 216 / 4e-64 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 212 / 2e-62 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10031610 [exp] 208 / 4e-61 AT1G34270 685 / 0.0 Exostosin family protein (.1) Lus10033734 [exp] 204 / 2e-59 AT1G34270 684 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.019G049800.2 pacid=42774741 polypeptide=Potri.019G049800.2.p locus=Potri.019G049800 ID=Potri.019G049800.2.v4.1 annot-version=v4.1 ATGGCGAACAAACAACTCCATATATTATCTTCAAGATCCAGATCTCCAATCCTCCTCTTCACAATCTGTCTTTTCGCTTTTTCTCTTCTCTTCTTACTCT TCTCTCTCTCCACCCGTCACCCATCAGCCTCTCCATACCCTAACACTAACCCCAATCTCTCTCTCAAACCCGAAACCTCCTTCGTCGCTTCCCTCGAGCA CTTCCTCGATCACAAATACCCGACATCCTCCTCCTCCTCCTCTCCGTTTCCTACAGTTAGCGAAGAGGATGTGTCAAGATTCGACGATCAAGTGTTTTCC AAAGAGCGCGATCGATTTTACAGAGAACCCTACTACCCGTTGGATTTGCCAATTAGGGTTTACCTTTACGAGATGCCGTCCAAATTCACCTACGATTTGC TTTGGCTGTTTAGAAATACTTATAGAAACACTGATAATCTCACCTCTAATGGCAGCCCCGTCCATCGATTAATCGAACAGCATTCTGTTGATTACTGGCT TTGGGCGGATCTGATTGCGCCCGAATCGGAAAGGTTGTTGAAAAGTGTGGTGAGAGTTGAGAGGCAGGAGGATGCGGATCTGTTCTACGTGCCTTTTTTC ACAACTATAAGCTTTTTCTTATTGGAGAAGCAGCAATGCAAGGCGCTTTATAGGGAAGCTCTGAAGTGGGTGACAGATCAGCCTGCATGGAAACGATCGG AAGGAAGGAATCACATATTTCCTATTCATCATCCATGGTCTTTCAAATCTGTTCGTAGATATGTCAAAAATGCAATTTGGTTGTTACCAGATATGGACTC CACAGGGAACTGGTACAAACCAGGACAAGTTTTTCTGGAGAAAGACCTAATTCTTCCTTATGTCCCCAATGTGAATTTGTGTGACACCAAATGCATATCA GAAAGTGAATCAAAGAGAAGCACCTTGCTTTACTTTCGTGGGAGGCTTAAAAGAAATGCAGGTGGGAAGATACGTGCAAAACTTGTAGCAGAACTAAGTG GTGCCGAGGGCGTGTTTATAGAGGAGGGGACAGCTGGAGAGGGAGGGAAAGCAGCAGCTCAAATTGGCATGCGCAAGTCCATTTTTTGCTTAAGTCCAGC TGGTGATACACCGTCATCTGCCAGATTATTCGATGCCATTGTCAGTGGTTGCATACCAGTTGTAGTCAGTGATGAATTAGAGTTGCCTTTTGAAGGAATA CTTGATTACAGAAAGATAGCTTTATTTGTTTCTTCCAGTGATGCTGTACAACCAGGTTGGCTATTAAAATTCTTGAAAGGCATTAGCCTTGCCCAAATTC GGGGAATGCAAAGAAACCTTGCCAAGTATTCAAGGCACTTTATTTATTCCAGTCCAGCTCTACCCCTAGGACCTGAAGATTTGGTTTGGAGAATGATGGC TGGTAAACTGGTGAACATCAGGCTTCACACACGGAGATCACAGCGTGTGGTGAAAGAGTCTAGAAGTGTATGTGCTTGTGATTGTAAACGTGCCAACTTT ACAGTCCCGGTTCTTTGA
AA sequence Show only first row Show all	>Potri.019G049800.2 pacid=42774741 polypeptide=Potri.019G049800.2.p locus=Potri.019G049800 ID=Potri.019G049800.2.v4.1 annot-version=v4.1 MANKQLHILSSRSRSPILLFTICLFAFSLLFLLFSLSTRHPSASPYPNTNPNLSLKPETSFVASLEHFLDHKYPTSSSSSSPFPTVSEEDVSRFDDQVFS KERDRFYREPYYPLDLPIRVYLYEMPSKFTYDLLWLFRNTYRNTDNLTSNGSPVHRLIEQHSVDYWLWADLIAPESERLLKSVVRVERQEDADLFYVPFF TTISFFLLEKQQCKALYREALKWVTDQPAWKRSEGRNHIFPIHHPWSFKSVRRYVKNAIWLLPDMDSTGNWYKPGQVFLEKDLILPYVPNVNLCDTKCIS ESESKRSTLLYFRGRLKRNAGGKIRAKLVAELSGAEGVFIEEGTAGEGGKAAAQIGMRKSIFCLSPAGDTPSSARLFDAIVSGCIPVVVSDELELPFEGI LDYRKIALFVSSSDAVQPGWLLKFLKGISLAQIRGMQRNLAKYSRHFIYSSPALPLGPEDLVWRMMAGKLVNIRLHTRRSQRVVKESRSVCACDCKRANF TVPVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16890			Exostosin family protein (.1)		Potri.019G049800 [exp]	0	1
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.006G103400 [exp]	3.00	0.7719
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	14.86	0.6860
AT5G57460			unknown protein		Potri.006G168200 [exp]	15.87	0.7407
AT4G14096			F-box/RNI-like superfamily pro...		Potri.013G151700 [exp]	23.45	0.6624
AT3G58650			unknown protein		Potri.010G140900 [exp]	28.56	0.7140
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	29.39	0.6552
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	29.58	0.7136
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.002G152900 [exp]	31.81	0.6677
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Potri.002G096400 [exp]	32.61	0.6541
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Potri.009G168200 [exp]	33.48	0.6253

Compare expression of checked genes

Potri.019G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.