Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16880 573 / 0 Target of Myb protein 1 (.1.2.3) AT1G06210 244 / 2e-77 ENTH/VHS/GAT family protein (.1.2) AT4G32760 138 / 1e-35 ENTH/VHS/GAT family protein (.1.2) AT1G21380 137 / 1e-35 Target of Myb protein 1 (.1) AT1G76970 134 / 5e-35 Target of Myb protein 1 (.1) AT3G08790 134 / 3e-34 ENTH/VHS/GAT family protein (.1) AT5G01760 116 / 2e-28 ENTH/VHS/GAT family protein (.1) AT2G38410 105 / 1e-24 ENTH/VHS/GAT family protein (.1) AT5G63640 84 / 2e-17 ENTH/VHS/GAT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G082500 [exp] 723 / 0 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.005G225000 [exp] 266 / 1e-85 AT1G06210 402 / 6e-139 ENTH/VHS/GAT family protein (.1.2) Potri.002G038000 [exp] 258 / 2e-82 AT1G06210 409 / 7e-142 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 147 / 7e-39 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.002G075500 [exp] 141 / 3e-37 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 140 / 4e-36 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 135 / 2e-34 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 131 / 9e-34 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.006G106500 [exp] 131 / 4e-33 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013788 [exp] 591 / 0 AT5G16880 509 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10039144 [exp] 579 / 0 AT5G16880 516 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10005924 [exp] 579 / 0 AT5G16880 541 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10040912 [exp] 577 / 0 AT5G16880 539 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10024896 [exp] 253 / 3e-81 AT1G06210 387 / 3e-134 ENTH/VHS/GAT family protein (.1.2) Lus10022922 [exp] 237 / 1e-74 AT1G06210 369 / 2e-126 ENTH/VHS/GAT family protein (.1.2) Lus10022140 [exp] 142 / 5e-37 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10014155 [exp] 135 / 1e-34 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 135 / 2e-34 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10028649 [exp] 127 / 1e-31 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF00790 [poplar] [flax] VHS VHS domain CL0009 [poplar] [flax] PF03127 [poplar] [flax] GAT GAT domain
Representative CDS sequence Show only first row Show all	>Potri.019G050000.4 pacid=42774257 polypeptide=Potri.019G050000.4.p locus=Potri.019G050000 ID=Potri.019G050000.4.v4.1 annot-version=v4.1 ATGAGTGACAATTTGATGGAGAAGGTCAGTGCTTTTGGCGAACGCCTCAAGATTGGAGGTGCCGAGGTGGGTCGAAAGATGAGTGCAGGCATGAGCTCAA TGAGCTTCAAGGTGAAGGAGCTATTACAAGGTCCTAACCAAGCCGATAAACTTGTCGAGGATGCCACTGCAGAGACGCTTGATGAGCCTGATTGGGCCAT GAATCTTGATATCTGTGACATGATCGATCATGAAAAAGTTAGTAGTGTTGAATTGATTCGTGGCATAAAGAAGAGGATCATGATAAAAAATGCTAGGGTA CAGTATTTAGCCTTAGTGTTGCTTGAAACATGTGCTAAGAATTGTGAGAAGGCTTTCTCAGAGGTGGCGGCTGAGAGGGTTCTTGATGAAATGGTAAAGT TGATTGATGATCCTCAGACTGTCGTCAATAATAGGAATAAAGCTCTATTGCTCATTGAAGCATGGGGAGAGTCAACCAGTGAACTGCGCTATTTACCTGT TTTTGAAGAAACATACAAGAGTTTAAAATCAAGGGGTATCCGGTTCCCTGGTCGTGACAATGAGAGTTTAGTGCCTATCTTCACCCCACCTCGTTCTGTG TCGGCACCAGAAGTGGATACTAGTCTTGCACGGCAGATTGAGTATGATATTCCTCTGCAAAGCTTTACAGCTGAACAGACAAAGGAAGCATTTGATGTGG CAAGAAACAGCATAGAGCTTCTCGCTACAGTGTTGTCCTCTTCACCTGAACAAGATGCATTACAGGATGATTTGACGACTACTCTAGTCCATCAGTGTCG GCAGTCACAATTGACTGTGCAAAGAATCATTGAGAAGGCTGGAGATAATGAGGCCCTGCTTTTTGAAGCTTTGAATGTGAATGACGAGATCCAGAAAGTT CTCTCCAAGTATGAAGAGTTAAAAGCCCCATCAGTGGTTCCAGTTATACCTGAACCTGCTATGATTCCTGTTGCTGTCGAGCCTGATTCACCTGTTAATG CGAAAGAAGATGCGTTGGTCAGGAAACCTGCAGGTTCACGAGGTGGGACTCATGGAGGGAGCAATGATGACATGATGGATGATCTTGATGAAATGATCTT TGGTAAGAAGGGTGGGGGTACATCCCAAGTTGTGCATGACCCGAAGAAACAGCAATCTTCTAAAGACGACCTCATAACCTTCTAA
AA sequence Show only first row Show all	>Potri.019G050000.4 pacid=42774257 polypeptide=Potri.019G050000.4.p locus=Potri.019G050000 ID=Potri.019G050000.4.v4.1 annot-version=v4.1 MSDNLMEKVSAFGERLKIGGAEVGRKMSAGMSSMSFKVKELLQGPNQADKLVEDATAETLDEPDWAMNLDICDMIDHEKVSSVELIRGIKKRIMIKNARV QYLALVLLETCAKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALLLIEAWGESTSELRYLPVFEETYKSLKSRGIRFPGRDNESLVPIFTPPRSV SAPEVDTSLARQIEYDIPLQSFTAEQTKEAFDVARNSIELLATVLSSSPEQDALQDDLTTTLVHQCRQSQLTVQRIIEKAGDNEALLFEALNVNDEIQKV LSKYEELKAPSVVPVIPEPAMIPVAVEPDSPVNAKEDALVRKPAGSRGGTHGGSNDDMMDDLDEMIFGKKGGGTSQVVHDPKKQQSSKDDLITF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.019G050000 [exp]	0	1
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	2.23	0.7068
AT5G02420			unknown protein		Potri.010G231600 [exp]	4.69	0.6925
					Potri.009G086900 [exp]	5.74	0.6921
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.002G240900 [exp]	6.32	0.6680
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.010G100200 [exp]	7.21	0.6921	NTR1.3
AT3G51990			Protein kinase superfamily pro...		Potri.001G260800 [exp]	9.16	0.6296
AT4G35860		ATGB2, AtRABB1b...	GTP-binding 2 (.1.2)		Potri.009G159600 [exp]	9.16	0.6777	Pt-ATGB2.1
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.012G117800 [exp]	9.48	0.6543	ARA7.1
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	10.72	0.6020
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	11.00	0.6535

Compare expression of checked genes

Potri.019G050000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.