Plant FIBer expression Database

Potri.019G050100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16870 259 / 2e-89 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1)
AT3G03010 237 / 1e-80 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
AT4G32900 117 / 2e-33 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G237900
[exp]
117 / 2e-33 AT4G32900 238 / 1e-80 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
Potri.013G082850
[exp]
104 / 5e-30 AT3G03010 100 / 8e-29 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009246
[exp]
276 / 3e-96 AT5G16870 259 / 8e-90 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1)
Lus10011608
[exp]
50 / 7e-09 AT4G32900 89 / 5e-24 Peptidyl-tRNA hydrolase II (PTH2) family protein (.1), Peptidyl-tRNA hydrolase II (PTH2) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0305 PTH2 PF01981 PTH2 Peptidyl-tRNA hydrolase PTH2
Representative CDS sequence
>Potri.019G050100.2 pacid=42773733 polypeptide=Potri.019G050100.2.p locus=Potri.019G050100 ID=Potri.019G050100.2.v4.1 annot-version=v4.1
ATGGATTTGAATTGGCTTAGTGCCATATTAGTTGGGGCAGGCTGCCTTGCTTTAGGTTACTGCATTGGGACACGCTGCCCTTCTTTCATCTTTTTAAGGT
TAACACCAAAAGTGGTTAAAGACACCAAAACTAACCCTAGTAGTCATCATGGAAACAAGAAAAACAAGTCCAAAGAACCATTTGAGATTGATAAGCTGGC
TGATATTCTTGATGATTTCAAGATGGTGTTGGTTGTCAGAAACGATCTTAAGATGGGAAAAGGGAAAATTGCAGCTCAATGCAGTCATGCAACTTTGGGC
CTGTATAAAAAGCTTCTTAACCGAGCACCTAAGGCTTTAAACAGGTGGGAGATGTGTGCTCAGCCAAAGGTGGTCGTGAAAATTGAAAGTGAGGAGGATA
TGCTTGTTTTGCAAGAGAGGGCAAAATCACTTAAACTACCAACCCATATTACTATTGATGCTGGAAGAACACAGATTGCTCCAAATTCAAGAACAGTGAT
GGCTATTCTTGGACCTGTTGAAGTGGTTGATGATGTCACAGGTGGGCTGAAGCTTTTGTAG
AA sequence
>Potri.019G050100.2 pacid=42773733 polypeptide=Potri.019G050100.2.p locus=Potri.019G050100 ID=Potri.019G050100.2.v4.1 annot-version=v4.1
MDLNWLSAILVGAGCLALGYCIGTRCPSFIFLRLTPKVVKDTKTNPSSHHGNKKNKSKEPFEIDKLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLG
LYKKLLNRAPKALNRWEMCAQPKVVVKIESEEDMLVLQERAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDDVTGGLKLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16870 Peptidyl-tRNA hydrolase II (PT... Potri.019G050100
[exp]
0 1
AT3G25545 unknown protein Potri.010G134600
[exp]
1.00 0.8256
AT2G37560 ATORC2 origin recognition complex sec... Potri.003G094800
[exp]
2.44 0.7732 Pt-ORC2.1
AT1G26740 Ribosomal L32p protein family ... Potri.010G165100
[exp]
2.82 0.7699
AT1G34760 RHS5, GF14OMICR... ROOT HAIR SPECIFIC 5, general ... Potri.005G164500
[exp]
5.47 0.7449
AT1G21690 RFC4, EMB1968 replication factor C 4, embryo... Potri.005G181300
[exp]
8.48 0.7326
AT5G05920 DHS, EDA22 embryo sac development arrest ... Potri.003G186900
[exp]
12.00 0.7410
AT5G56130 THO3, AtTEX1 Transducin/WD40 repeat-like su... Potri.001G470900
[exp]
14.86 0.7071
AT4G22300 SOBER1 SUPPRESSOR OF AVRBST-ELICITED ... Potri.011G023000
[exp]
20.49 0.6703
AT1G65700 Small nuclear ribonucleoprotei... Potri.001G278000
[exp]
21.44 0.7039
AT3G57610 ADSS, ATPURA adenylosuccinate synthase (.1) Potri.016G087900
[exp]
22.04 0.7286

Potri.019G050100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.