Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16810 544 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016488 [exp] 489 / 5e-173 AT5G16810 504 / 1e-178 Protein kinase superfamily protein (.1) Lus10040743 [exp] 474 / 3e-166 AT5G16810 488 / 7e-172 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G050500.1 pacid=42773300 polypeptide=Potri.019G050500.1.p locus=Potri.019G050500 ID=Potri.019G050500.1.v4.1 annot-version=v4.1 ATGATTCTGGTTTCACCGGATTGCCTCTCTAATTCTTATTCGTCGATGCTGTTTTCTCGCAATCCCATGCTCTCCTCTCATCTCTGCTTCACAATAAGAA GAAGGACGTTCCGAACGAAGACGAGTCGACGACTCTGTGTAGCGAGTAGTCTGATTACAAGCCCTGAGTCATTCGAAGTTGGGAGACTCATTGGCAGCTA CGGCTTCATGAACATTACGAGCTATTCGGCAGGAGGAATGGATTTTGAATATTCAGGTGGACAGCTGAAGGTTCAAGATGTAGGAGAAGGCAGTGTGAAG ATCAGGCTTTACGAAGGAAGAATAGCGCAGGGTTCACTTAGAGGCACTCCTGTTGTTTTCAAGGTATATCCTGGACAGCGAGCTGGTGGCATAGAAGCTG ATATGATGGCTGCAAATGAGCTCAATGCCCATGCTGTACTTCAGAGCAGTTCAAAAGGTGCATGTCAGAATCTCCTGATGCTTGTTGGAGGATTTGAGAC AAAAACTGGAGAACAGTGGCTTGCTTTTCGTAATGGTGGGAAATATAGTGCAGCAGACTATGCAAAAGTTACTAGTGAAAAAATTTCAAAAAGCATTTCG ACCAAGGAAAACTCCTGGAATCATTTTGAACAAGAACAAAAAATAAAGCGCAGAAGATATTTTGTTATCAAGCTACTTCAGGGGGCTATTACTGGTCTAG CCTACATGCATTACCATGACAGATTGCACCAGAGTCTTGGACCATCTTCTGTTGTTCTCAACACTATAGCAGAGAGAGAGGCTCCTTATTTAGTTCCACG ACTTCGAGATCTAGCCTTTTCTGTTGATTTGAGGATTTCAAATTTAGAAGATGGCCGTGGGACATTATCAGAAGGACTTTGGAGAAGAGCAATTGCTGCT GGAGCCTCCACACCTATGGAGAAACGAGCCTTTGGAATTGCAGATGACATATATGAAGCTGGTCTTCTTCTTGCATACTTGGCTTTCGTTCCATTTTGTG AAGCAGGCATTGTGGATGCTCTTTCTTTGCAAAGGCTTTTAGAAAACACTTTCCGACTCGATCTTGAAGCTATGAGAGAATATTGTTTGGCAGATGATCG TTTGGAAGAAGCTGTGAAGTTTCTGGATATTGGTGACCGGGCTGGATGGCAATTACTTGAGGCAATGCTAAATCCAGACTTCCGGAAGAGACCAATCGCA GAAGCTGTGCTTAAGCATCGATTCATGATCGGAGCTGTTGTTTGA
AA sequence Show only first row Show all	>Potri.019G050500.1 pacid=42773300 polypeptide=Potri.019G050500.1.p locus=Potri.019G050500 ID=Potri.019G050500.1.v4.1 annot-version=v4.1 MILVSPDCLSNSYSSMLFSRNPMLSSHLCFTIRRRTFRTKTSRRLCVASSLITSPESFEVGRLIGSYGFMNITSYSAGGMDFEYSGGQLKVQDVGEGSVK IRLYEGRIAQGSLRGTPVVFKVYPGQRAGGIEADMMAANELNAHAVLQSSSKGACQNLLMLVGGFETKTGEQWLAFRNGGKYSAADYAKVTSEKISKSIS TKENSWNHFEQEQKIKRRRYFVIKLLQGAITGLAYMHYHDRLHQSLGPSSVVLNTIAEREAPYLVPRLRDLAFSVDLRISNLEDGRGTLSEGLWRRAIAA GASTPMEKRAFGIADDIYEAGLLLAYLAFVPFCEAGIVDALSLQRLLENTFRLDLEAMREYCLADDRLEEAVKFLDIGDRAGWQLLEAMLNPDFRKRPIA EAVLKHRFMIGAVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16810			Protein kinase superfamily pro...		Potri.019G050500 [exp]	0	1
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Potri.014G133400 [exp]	3.74	0.9063	APG3.1
AT3G19800			Protein of unknown function (D...		Potri.005G094700 [exp]	4.24	0.9260
AT1G32070		ATNSI	nuclear shuttle interacting (....		Potri.016G140000 [exp]	5.65	0.9123
AT5G19500			Tryptophan/tyrosine permease (...		Potri.001G224950 [exp]	5.83	0.9285
AT5G27560			Domain of unknown function (DU...		Potri.013G020800 [exp]	7.48	0.9272
AT3G63510			FMN-linked oxidoreductases sup...		Potri.001G264900 [exp]	12.16	0.9180
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.001G279100 [exp]	15.68	0.9150	F2KP.3
AT2G03390			uvrB/uvrC motif-containing pro...		Potri.010G161600 [exp]	19.23	0.9168
AT5G56850			unknown protein		Potri.006G151100 [exp]	25.37	0.8982
AT4G34090			unknown protein		Potri.009G099600 [exp]	26.26	0.8970

Compare expression of checked genes

Potri.019G050500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.