Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16800 334 / 2e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT3G02980 300 / 2e-103 MCC1 MEIOTIC CONTROL OF CROSSOVERS1 (.1) AT5G11340 67 / 1e-13 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G39000 48 / 2e-06 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079900 [exp] 459 / 6e-166 AT5G16800 346 / 3e-121 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.006G248900 [exp] 67 / 8e-14 AT5G11340 280 / 3e-98 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.018G032400 [exp] 66 / 3e-13 AT5G11340 270 / 4e-94 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G039300 [exp] 49 / 2e-06 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013457 [exp] 395 / 9e-141 AT5G16800 337 / 1e-117 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10041016 [exp] 392 / 2e-139 AT5G16800 334 / 1e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10013120 [exp] 70 / 2e-14 AT5G11340 256 / 8e-89 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10008088 [exp] 60 / 1e-10 AT5G11340 249 / 2e-85 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10040401 [exp] 45 / 2e-05 AT2G39000 386 / 3e-136 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10009229 [exp] 45 / 2e-05 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10023517 [exp] 45 / 2e-05 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10037996 [exp] 42 / 0.0003 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF00583 [poplar] [flax] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Potri.019G050700.1 pacid=42773590 polypeptide=Potri.019G050700.1.p locus=Potri.019G050700 ID=Potri.019G050700.1.v4.1 annot-version=v4.1 ATGGTGAACCAAAAAATTTCTCATCGTCCAACCATATGCTACAGACCTATACAACCTTCTGATTTGGAGGTATTAGAGCGATTACATGCTGATATATTCC CTATCAGGTACGAGGAAGAGTTTTTCCAAAGTGTTGTTCATGCACGTGATATTGTTTCCTGGGCTGCAGTCGACCGCAGTCGACCTAATGGTCACAGTGA TGAACTTATTGGATTTGTTACTGCACGGATTGTACTGGCAAAAGAAACTGAGATAGGAGATTTGCTCATATACGACCCCTTGAAACCAGATCAAACACTA GTTTACATCATGACACTTGGAGTAGTAGAAACTTACAGAAATCTTGGAATAGCAAGGTCTCTTATTCGTCAGGTCATTAAATATGCTTCAAGTTTTCCGA CATGTCATGCAGTTTACCTGCATGTGATCTCTTACAACATTCCTGCTATTCATTTGTACAAAAAAATGTCATTCAAGTGTATACGAAGGTTGCAAGGCTT TTATCTAATCAACGGCCAGCATTATGATTCATTCTTGTTTGTTTACTATGTAAATGGTGGTTGTTCTCCTTGCTCACCATTAGAGCTTCTTGTAGCTGCA GTGAGTTACATGACAAGCAGTCTCAAGACCGTAGCTGCGAGGCTAAGGAAAAATGAAGAGGAGTCACCAAAATTGCCCAAATGTAAAGAAACCAATTTTC TTATATCAATGCAAGCCAAGAGAAACCTCACAACTGAATGCACTGGTTATGAATGTGTGTAA
AA sequence Show only first row Show all	>Potri.019G050700.1 pacid=42773590 polypeptide=Potri.019G050700.1.p locus=Potri.019G050700 ID=Potri.019G050700.1.v4.1 annot-version=v4.1 MVNQKISHRPTICYRPIQPSDLEVLERLHADIFPIRYEEEFFQSVVHARDIVSWAAVDRSRPNGHSDELIGFVTARIVLAKETEIGDLLIYDPLKPDQTL VYIMTLGVVETYRNLGIARSLIRQVIKYASSFPTCHAVYLHVISYNIPAIHLYKKMSFKCIRRLQGFYLINGQHYDSFLFVYYVNGGCSPCSPLELLVAA VSYMTSSLKTVAARLRKNEEESPKLPKCKETNFLISMQAKRNLTTECTGYECV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16800			Acyl-CoA N-acyltransferases (N...		Potri.019G050700 [exp]	0	1
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.016G062200 [exp]	3.46	0.9195	Pt-MS2.2
AT1G68585			unknown protein		Potri.008G119300 [exp]	4.00	0.8812
AT1G16290			unknown protein		Potri.008G084100 [exp]	6.70	0.8920
					Potri.005G011350 [exp]	6.92	0.9263
AT4G30240			Syntaxin/t-SNARE family protei...		Potri.006G168800 [exp]	9.59	0.8488
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Potri.003G158500 [exp]	11.22	0.8763
AT1G58400			Disease resistance protein (CC...		Potri.012G083700 [exp]	11.83	0.9020
AT1G20970			unknown protein		Potri.016G047500 [exp]	13.78	0.8901
AT1G29200			O-fucosyltransferase family pr...		Potri.004G058900 [exp]	14.79	0.8307
AT1G77220			Protein of unknown function (D...		Potri.002G071400 [exp]	16.12	0.8441

Compare expression of checked genes

Potri.019G050700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.