Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59390 377 / 5e-133 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040180 [exp] 371 / 1e-130 AT3G59390 364 / 6e-128 unknown protein Lus10004383 [exp] 370 / 2e-130 AT3G59390 366 / 8e-129 unknown protein Lus10007819 [exp] 333 / 7e-115 AT3G59390 301 / 3e-102 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10218 [poplar] [flax] DUF2054 Uncharacterized conserved protein (DUF2054)
Representative CDS sequence Show only first row Show all	>Potri.019G051300.1 pacid=42773038 polypeptide=Potri.019G051300.1.p locus=Potri.019G051300 ID=Potri.019G051300.1.v4.1 annot-version=v4.1 ATGACCAAATATCATCTTTCTTTACAACTACTCATCCTTTTTCAGTTCTCGTCTATAATTTCAGCAATCAGGAAGGATATCGGGTTCGAACAAAGCAGAA GTTGCAGGAATACAGTTCAAGGAAGATATCTGCTCTCTGACGATAATGGGTATGTATGTGATGCGCTATCAGTGGATCCACCATCTCGTTGCTGCCCTGA AAACGGATTGAGATTTTCTTGTCAGGGATGCAACCTTGTTTCACAGTGTTGCAACTCCTATGAATTTTGTGTTTCGTGCTGCCTCCATCCTTCAAGGACA CAAGAGGCACAAGTTCTCAAGGTCAAGATAGCCAAGCCTTCAACTGCAGTGAGTTATACAAGTGTTTTTGATTTCTGTGCTGGGAGGTGCCGTCATAATT CGGAGAGCGTGGTTCATGAAAATGCTTATCGGAGTGATTTCCATCATTGCTTTTCCCTGCCATCAAATTCTTCAGGGGCCAATTATACACAATTAGAAGC AAGGCTCGGTGGAATTAATGTTGTAATTGGAAAGCAAGGTGAGTCCTGTGATTCAGTTTGCAAGTCAAATGGACAGTCATGCGTCTTAAATAAGCTCCTG GTGCTTAATCAATGTGACGTTATGCAGAAATATATGAGTTGCAAAGGAGGTTGTTTAGCAAGCATTGGAACAGATCAACCTGCTGAGGTTGTTGAAGATG CTCCAAGACACTTGAATCCAGGAGCATGCTTGTATACTCGAACACAATCATTGCTTTCCTGTGATGGTTCACTTTGGCATACCAGGAGACTTTGTCCATG TGCTTAG
AA sequence Show only first row Show all	>Potri.019G051300.1 pacid=42773038 polypeptide=Potri.019G051300.1.p locus=Potri.019G051300 ID=Potri.019G051300.1.v4.1 annot-version=v4.1 MTKYHLSLQLLILFQFSSIISAIRKDIGFEQSRSCRNTVQGRYLLSDDNGYVCDALSVDPPSRCCPENGLRFSCQGCNLVSQCCNSYEFCVSCCLHPSRT QEAQVLKVKIAKPSTAVSYTSVFDFCAGRCRHNSESVVHENAYRSDFHHCFSLPSNSSGANYTQLEARLGGINVVIGKQGESCDSVCKSNGQSCVLNKLL VLNQCDVMQKYMSCKGGCLASIGTDQPAEVVEDAPRHLNPGACLYTRTQSLLSCDGSLWHTRRLCPCA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59390			unknown protein		Potri.019G051300 [exp]	0	1
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079501 [exp]	1.41	0.8676
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.019G053300 [exp]	6.63	0.8395
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.009G034700 [exp]	6.70	0.8352
AT2G40110			Yippee family putative zinc-bi...		Potri.008G067100 [exp]	6.92	0.8327
AT5G15790			RING/U-box superfamily protein...		Potri.003G161600 [exp]	7.07	0.8047
AT4G23895			Pleckstrin homology (PH) domai...		Potri.001G091100 [exp]	7.74	0.8006
AT4G23895			Pleckstrin homology (PH) domai...		Potri.003G140500 [exp]	8.83	0.7683
AT3G01850			Aldolase-type TIM barrel famil...		Potri.001G332700 [exp]	9.48	0.8138
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Potri.015G103400 [exp]	10.24	0.8126
AT3G55380		UBC14	ubiquitin-conjugating enzyme 1...		Potri.008G053900 [exp]	12.96	0.8067	Pt-UBC7.1

Compare expression of checked genes

Potri.019G051300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.