Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16090 662 / 0 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT1G65040 624 / 0 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT4G25230 121 / 5e-29 RIN2 RPM1 interacting protein 2 (.1.2) AT5G51450 101 / 1e-22 RIN3 RPM1 interacting protein 3 (.1.2) AT5G01960 67 / 2e-11 RING/U-box superfamily protein (.1) AT2G44581 62 / 2e-11 RING/U-box superfamily protein (.1) AT2G44578 61 / 6e-11 RING/U-box superfamily protein (.1) AT2G17450 54 / 4e-08 RHA3A RING-H2 finger A3A (.1) AT1G73760 54 / 2e-07 RING/U-box superfamily protein (.1) AT1G17970 53 / 3e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G088400 [exp] 962 / 0 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.001G124000 [exp] 112 / 5e-26 AT4G25230 830 / 0.0 RPM1 interacting protein 2 (.1.2) Potri.003G109400 [exp] 109 / 5e-25 AT4G25230 790 / 0.0 RPM1 interacting protein 2 (.1.2) Potri.016G141200 [exp] 66 / 4e-11 AT5G01960 546 / 0.0 RING/U-box superfamily protein (.1) Potri.006G111800 [exp] 64 / 1e-10 AT5G01960 572 / 0.0 RING/U-box superfamily protein (.1) Potri.013G160000 [exp] 60 / 3e-09 AT5G01960 545 / 0.0 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 57 / 2e-08 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.003G142600 [exp] 55 / 3e-08 AT4G24015 144 / 3e-43 RING/U-box superfamily protein (.1) Potri.018G098000 [exp] 52 / 1e-07 AT2G18670 87 / 6e-22 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040359 [exp] 751 / 0 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023477 [exp] 733 / 0 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10031728 [exp] 105 / 1e-23 AT4G25230 843 / 0.0 RPM1 interacting protein 2 (.1.2) Lus10031152 [exp] 101 / 3e-22 AT4G25230 821 / 0.0 RPM1 interacting protein 2 (.1.2) Lus10000996 [exp] 62 / 6e-10 AT5G01960 626 / 0.0 RING/U-box superfamily protein (.1) Lus10011027 [exp] 61 / 2e-09 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10031515 [exp] 56 / 3e-08 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10006787 [exp] 54 / 4e-08 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10013497 [exp] 54 / 5e-08 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10028009 [exp] 52 / 7e-08 AT5G59550 57 / 5e-10 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.019G051500.2 pacid=42774720 polypeptide=Potri.019G051500.2.p locus=Potri.019G051500 ID=Potri.019G051500.2.v4.1 annot-version=v4.1 ATGATGCGGCTGCGCACATACGCGAGCCTCAGTTTGGTGGGTGCTCTAGCTGTAACTTATCATGCATTCAACAGTAGAGGCCAGTTTTACCCTGCTATGG TTTATTTATCCACCTCTAAGATCACTTTAGTCCTTCTTCTCAACATGGGTTTAGTCATTATGTGCATTTTATGGCAATTCATTAAGCGGCTATTCCTTGG TTCCCTCCGTGAAGCTGAAGTTGAGAGGTTGAATGAGCAGTCGTGGAGAGAGCTCATGGAAATTCTCTTTGCCATTACTATTTTTAGGCAGGACTTCTCC GTAACCTTTCTTGCCATGGTCACCACCTTGTTATTAATCAAGTCTCTGCATTGGTTGGCTCAAAAGAGGGTTGAATACATTGAGACAACACCATCTGTTA ACTGGTTATCTCATGTTCGGATTGTTTCTTTTCTGGGTTTCCTTTTTCTCCTAGACAGCATGTTTTTGTACAGTTCTGTAAAGTATTTGCTTGAAACAAG GCAGGCTTCAGTGTCTCTCTTCTTCTCGTTTGAGTACATGATACTGGCGACAACAACTGTGTCAACATTTGTAAAATATGTTTTCTATGTGAGTGACATG CTTATGGAAGGACAATGGGAAAAAAAGCCTATTTACACCTTTTATTTGGAATTTGTTCGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTCCTTG TCATTTTCATGAACTATGGTGTGCCTTTGCACTTAATACGGGAGCTTTATGAGACACTCAGGAATTTCAAAATTCGTGTTGCTGATTACATTCGTTATAG GAAGATCACTTCCAATATGAATGATCGGTTTCCAGATGCAACAGCTGAAGAGATTGATGCAAGTGATGCAACCTGTATTATTTGTCGTGAAGAGATGACC ACAGCCAAGAAGTTATTATGTGGACATCTTTTTCATGTTCATTGTCTGCGTTCATGGTTGGAGCGACAACATACTTGCCCTACATGCAGAGCCCTAGTTG TACCACCTGAAAATAGTGTCAGTGCATCTGGAGCACAACATGGAGCACAACCAGATACTCACCAACAGGGTAATTATGAAACTGGCACTGCAACATCTGC AACTCGGATTTCAGCTGGTGGAGTGGCTGATGATAGTTTGAGCAGGAATCAGGTCAGACTCCAAGCTGCTGCCGCTGCCGCTTCTGTATATGAGAAGTCA TTCACATATCCTTCAGCAAACACTATAATGTGGTCACCTGGATATGCCTTACTCCCTCAGGTTCAGAGGCCTTTGGCTGACTCCACCAATATGGAGCCAA GTGGAGATCAAGGTGTCGTTGGACAACCACGGCTGCAATTTTCTATCCAAGGTGGACCCCCAAACTTGACCTTGCCTCAACTTCCCCACTGTGTCTTTGT CCCCATTCAGGCACCTGGTGCTTGTGTGTATCAGGGAGAGAGAGCGTGCAGTACACCAAACTCTGAGTTGGAAGCTCAGAAAAATTTTCTTCAACATCAG ATTGAGGTCCTGCAAAGTCAGCTCCAACTACTACAGAAGCCGGAGACTGAGGAAAGTATGCTTTTGGCTCCCACAACATCATCAGATAATAAAGGCAAGA CTGTTGCATCATCACCCTCTGTATCAGAATCTGGTTATCACGCAGAGATTGGCCAGACTGATGATGCTGACACAGCGAATAACGTAGATCTCAAGCTTTA A
AA sequence Show only first row Show all	>Potri.019G051500.2 pacid=42774720 polypeptide=Potri.019G051500.2.p locus=Potri.019G051500 ID=Potri.019G051500.2.v4.1 annot-version=v4.1 MMRLRTYASLSLVGALAVTYHAFNSRGQFYPAMVYLSTSKITLVLLLNMGLVIMCILWQFIKRLFLGSLREAEVERLNEQSWRELMEILFAITIFRQDFS VTFLAMVTTLLLIKSLHWLAQKRVEYIETTPSVNWLSHVRIVSFLGFLFLLDSMFLYSSVKYLLETRQASVSLFFSFEYMILATTTVSTFVKYVFYVSDM LMEGQWEKKPIYTFYLEFVRDLLHLSMYLCFFLVIFMNYGVPLHLIRELYETLRNFKIRVADYIRYRKITSNMNDRFPDATAEEIDASDATCIICREEMT TAKKLLCGHLFHVHCLRSWLERQHTCPTCRALVVPPENSVSASGAQHGAQPDTHQQGNYETGTATSATRISAGGVADDSLSRNQVRLQAAAAAASVYEKS FTYPSANTIMWSPGYALLPQVQRPLADSTNMEPSGDQGVVGQPRLQFSIQGGPPNLTLPQLPHCVFVPIQAPGACVYQGERACSTPNSELEAQKNFLQHQ IEVLQSQLQLLQKPETEESMLLAPTTSSDNKGKTVASSPSVSESGYHAEIGQTDDADTANNVDLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.019G051500 [exp]	0	1
AT2G24420			DNA repair ATPase-related (.1....		Potri.018G003700 [exp]	2.23	0.7065
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.006G040100 [exp]	3.46	0.6819
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	10.00	0.6407
AT2G32730			26S proteasome regulatory comp...		Potri.001G314300 [exp]	10.58	0.6511
AT5G43960			Nuclear transport factor 2 (NT...		Potri.002G257000 [exp]	15.55	0.6877
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Potri.017G136133 [exp]	19.44	0.6044
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.008G214100 [exp]	21.72	0.6816
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.009G018800 [exp]	22.44	0.6454
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	23.36	0.6668
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.002G070200 [exp]	24.59	0.6339	RBP1.2

Compare expression of checked genes

Potri.019G051500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.