Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07070 474 / 4e-165 Protein kinase superfamily protein (.1) AT3G02810 470 / 2e-161 Protein kinase superfamily protein (.1) AT4G13190 449 / 1e-155 Protein kinase superfamily protein (.1) AT5G16500 457 / 4e-155 Protein kinase superfamily protein (.1) AT3G24790 440 / 2e-152 Protein kinase superfamily protein (.1) AT5G02800 433 / 2e-149 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 433 / 2e-147 Protein kinase superfamily protein (.1.2) AT5G13160 426 / 2e-145 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G20530 422 / 7e-145 Protein kinase superfamily protein (.1) AT1G07870 401 / 3e-136 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241600 [exp] 458 / 2e-158 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 449 / 1e-153 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 440 / 6e-152 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 444 / 2e-151 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 437 / 6e-150 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 436 / 5e-149 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 431 / 1e-148 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G137000 [exp] 429 / 1e-147 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 428 / 2e-147 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003836 [exp] 461 / 5e-158 AT3G02810 472 / 4e-162 Protein kinase superfamily protein (.1) Lus10011866 [exp] 456 / 7e-158 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10003533 [exp] 449 / 2e-153 AT5G16500 468 / 1e-159 Protein kinase superfamily protein (.1) Lus10033966 [exp] 446 / 2e-152 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 446 / 2e-152 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 431 / 5e-147 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 424 / 1e-145 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 423 / 3e-145 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 422 / 9e-145 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10043050 [exp] 419 / 2e-143 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.019G051600.1 pacid=42774006 polypeptide=Potri.019G051600.1.p locus=Potri.019G051600 ID=Potri.019G051600.1.v4.1 annot-version=v4.1 ATGAATTGCTTCTCGTGCTTCCAATCTCAGAAAAGCAAGAGAGAGAATGGGTCGCCAATGTTGTCTGAGATCAAGAAACAAAAACCCGGAGATGGAAACA AGATGGAGGAAGATAGAGATAATGTCGAAATAGGAGATATTGAGACCCAATCCTTCACCTTCCGCGAGCTTGCCACTGCAACCAGGAACTTCCGTCAAGA ATGCCTGTTGGGTGAAGGTGGATTTGGAAGAGTCTACAGAGGGACCCTGGCATCAACCGGGCAGGTGGTGGCTGTGAAGCAACTTGACAGGAATGGACTG CAAAGAAACGAGTTTCTCGGTGAGGTCTTGACGCTTAGTCGTTTACACCACCCAAACCTGGTCAACCTCATTGGATACTGTGCTGATGGAGACCAGAGGC TTTTGGTGCATGAATTAATGTCAGGAGGCTCTCTGGAGGATCATCTCCTTGATATAGCAGCAGAACGAAAGCCATTGAACTGGTTTGCCAGAATGAAAGT AACTTTTGGTACCGCTAAAGGACTAGAATACCTGCATGAAAAAGCCGATCCCGCAGTTATATTTCGCGATTTAAAGCCCTCCAATATTTTTCTGGATGAA GATTTCACCCCCAAGCTCTCTGATTTCGGACTCGCCAAGCTTGGGCCTTCTGGGGACAAGATGCATCCTTCATCAAGAGTGATGGGAACTTATGGTTACT GTGCTCCAGAATATGCTAGAGCAGGTCATCTCACACAAAAATCAGACGTGTACGGTTTCGGAGTTATTTTGCTGGAGCTCATTACCGGAAGAAGAGCCAT AGACACTACAAAACCCATCGACGAGCAAAATCTAGTTTCTTGGGCACAACCGAAATTCAAGGACCCAAAAAAGTATCCAGATATGGCCGATCCACTTCTT AACAAGCAATTTCCCGAAAAAGACCTGAATCAAGTTGTTGCAATAGCAGCAATGTGTCTGCAAGATGAGTCATCAGCCCGTCCTTTGATGAGCGACGTTG TAACAGCATTAAGTTTTCTGTCAACAGCTACTGATATGCCTCAATTGATCCCTCCTTCAGAGGAGAAAGATGGTTCAGATGACGATGATAAGGCTAGTGA TGGCAGTCAGAGCGAAGAGAGTTCAGATAACGAGGACAGAGAAAAAGAACATGATGGAGATACTTCAGATCACCATGATGATGAAAGTTCAGATAACGAG GATGGGGACAGTGACTGTAGAGATCAACAGACTGTTACCGGGAGCAGAAACTTCACCACAAGCAGCAGCATGAAATCAATGGATGACAGTGTTTCTTCCG CTCGTAAAAACAGCAGGAGATTGGAGGAGTTCACATCGAATGGTAGAGGATCACAATATGGAAGTGTTTCCTCAAATGGCGCTAGCAGCAGGAGTTCGCA TTGTAATGCCTCTTTCCACCGCAAGAGCAGCAAAAAATCGAAAAATTCTTTGAGCCACAAAAGCAGCACGGGATCAAGACTGGAAGGAAGCACTGTTTCT ACCAGCGGCAAAAGCAGCAGCAGCAAGTCACGAGACAGAAACGCTTCTTTAAGCTTCAGCAGCGGCCAGGATTTAGAGGATGAAGTTGGATCTGTGAAGT CACAATAG
AA sequence Show only first row Show all	>Potri.019G051600.1 pacid=42774006 polypeptide=Potri.019G051600.1.p locus=Potri.019G051600 ID=Potri.019G051600.1.v4.1 annot-version=v4.1 MNCFSCFQSQKSKRENGSPMLSEIKKQKPGDGNKMEEDRDNVEIGDIETQSFTFRELATATRNFRQECLLGEGGFGRVYRGTLASTGQVVAVKQLDRNGL QRNEFLGEVLTLSRLHHPNLVNLIGYCADGDQRLLVHELMSGGSLEDHLLDIAAERKPLNWFARMKVTFGTAKGLEYLHEKADPAVIFRDLKPSNIFLDE DFTPKLSDFGLAKLGPSGDKMHPSSRVMGTYGYCAPEYARAGHLTQKSDVYGFGVILLELITGRRAIDTTKPIDEQNLVSWAQPKFKDPKKYPDMADPLL NKQFPEKDLNQVVAIAAMCLQDESSARPLMSDVVTALSFLSTATDMPQLIPPSEEKDGSDDDDKASDGSQSEESSDNEDREKEHDGDTSDHHDDESSDNE DGDSDCRDQQTVTGSRNFTTSSSMKSMDDSVSSARKNSRRLEEFTSNGRGSQYGSVSSNGASSRSSHCNASFHRKSSKKSKNSLSHKSSTGSRLEGSTVS TSGKSSSSKSRDRNASLSFSSGQDLEDEVGSVKSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07070			Protein kinase superfamily pro...		Potri.019G051600 [exp]	0	1
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.003G212800 [exp]	1.73	0.7030	RAV3
					Potri.001G388001 [exp]	8.36	0.6774
AT5G47530			Auxin-responsive family protei...		Potri.019G095800 [exp]	19.28	0.6807
AT1G76750			Protein of unknown function (D...		Potri.003G191800 [exp]	46.30	0.5049
AT3G26740		CCL	CCR-like (.1)		Potri.003G163402 [exp]	53.44	0.5975
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.001G001201 [exp]	67.82	0.5192
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.005G187700 [exp]	85.97	0.5550
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	103.49	0.5492
AT3G26610			Pectin lyase-like superfamily ...		Potri.010G044001 [exp]	109.53	0.5029
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Potri.015G066700 [exp]	120.58	0.5469	LBD27.2

Compare expression of checked genes

Potri.019G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.