Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16510 494 / 1e-176 RGP5 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) AT3G02230 342 / 9e-117 ATRGP1, RGP1 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) AT5G15650 335 / 5e-114 REVERSIBLYGLYCOSYLATEDPOLYPEPTIDE2, RGP2, ATRGP2 reversibly glycosylated polypeptide 2 (.1) AT3G08900 335 / 1e-113 RGP3 reversibly glycosylated polypeptide 3 (.1) AT5G50750 330 / 6e-112 RGP4 reversibly glycosylated polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G101100 [exp] 344 / 2e-117 AT3G02230 610 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Potri.004G117800 [exp] 338 / 4e-115 AT5G15650 663 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.008G097600 [exp] 338 / 5e-115 AT3G08900 669 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.010G156700 [exp] 338 / 5e-115 AT3G08900 658 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.017G099100 [exp] 335 / 6e-114 AT5G15650 671 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.015G060300 [exp] 329 / 1e-111 AT3G08900 650 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.015G099400 [exp] 44 / 0.0001 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020379 [exp] 521 / 0 AT5G16510 525 / 0.0 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) Lus10009555 [exp] 518 / 0 AT5G16510 526 / 0.0 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) Lus10036970 [exp] 345 / 5e-118 AT3G08900 645 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10000646 [exp] 345 / 8e-118 AT3G08900 662 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10004640 [exp] 342 / 1e-116 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10026676 [exp] 342 / 1e-116 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10022443 [exp] 342 / 2e-116 AT3G02230 642 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10005076 [exp] 332 / 1e-112 AT3G02230 662 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10017868 [exp] 331 / 2e-112 AT5G15650 648 / 0.0 reversibly glycosylated polypeptide 2 (.1) Lus10034376 [exp] 323 / 1e-109 AT3G02230 608 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03214 [poplar] [flax] RGP Reversibly glycosylated polypeptide
Representative CDS sequence Show only first row Show all	>Potri.019G051700.1 pacid=42773204 polypeptide=Potri.019G051700.1.p locus=Potri.019G051700 ID=Potri.019G051700.1.v4.1 annot-version=v4.1 ATGTCTCTAGCTAACATCAAAGACAGTGAGGTTGACATTGTGATAGGAGCACTTCACTCAGACCTGACATCATTTATGAATGAGTGGAGACCCATATTCT CCCGATTCCACTTGATAATTGTCAAAGACCCTGATCTCAAAGAGGAACTTAGGATACCAGAGGGCTTTAATTTTGATGTCTATTCCAAGTCTCATATCGA CCGGGTGGTGGGCTCTTCTTCCTCCATAGTCTTCTCCGGCTACTCATGCAGGTATTTCGGCTTTCTTGTATCTCGTAAGAAATACATTGTCTCAATCGAT GATGATTGCATCCCAGCTAAGGACAGTAAGGGTTTTCTAATAGATGCTGTGGCCCAGCATCTTGCTAACCTGACAACTCCAGCCACTCCTTTTTTCTTCA ATACTCTCTATGACCCTTATCGTGAGGGAGCAGATTTTGTTCGTGGGTACCCATTTAGCCTGCGTAGTGGGGTTACGTGTGCTCTGTCATGTGGACTCTG GCTTAATTTAGCTGACTTGGATGCTCCTACACAAGCCCTGAAGCCAGGGCAGAGAAATTCTCGATATGTTGATGCTGTTATGACCATTCCATCTAGGGCC ATGATGCCCATCAGTGGAATCAACATTGCTTTTGATCGTGAGGCCGTGGGGCCGGCTTTATTGCCAGCTTTGAAGTTGGCTGGGGAAGGAAATCTTAGAT GGGAAACAATGGAAGATATTTGGAGTGGAATGTGTGTTAAGGTTGTGTGCGATCACCTTGGTCTTGGTGTGAAAAGTGGGCTACCGTATGTGTGGAGAAA AGACAGAGGTAGTGCGATAGAAAGCTTGAAAAAAGAGTGGGAAGGGGTAAAGCTGACGGAGGAAATTGTCCCGTTCTTTCAGTTAGTTAGGCTGCCACAA ACAGCAGCTACAACAGAAGACTGCATCCTTGAGATGGCAACAACAGTGAAGCAACAGTTAGGACCATCAAATCCCGTTTTCACTCGTGCTGCTGAAGCCA TGGTTGAATGGGTCAAGCTGTGGAAGGCAGTTGGGTCTGGTTCCTCTCCTTTGTAG
AA sequence Show only first row Show all	>Potri.019G051700.1 pacid=42773204 polypeptide=Potri.019G051700.1.p locus=Potri.019G051700 ID=Potri.019G051700.1.v4.1 annot-version=v4.1 MSLANIKDSEVDIVIGALHSDLTSFMNEWRPIFSRFHLIIVKDPDLKEELRIPEGFNFDVYSKSHIDRVVGSSSSIVFSGYSCRYFGFLVSRKKYIVSID DDCIPAKDSKGFLIDAVAQHLANLTTPATPFFFNTLYDPYREGADFVRGYPFSLRSGVTCALSCGLWLNLADLDAPTQALKPGQRNSRYVDAVMTIPSRA MMPISGINIAFDREAVGPALLPALKLAGEGNLRWETMEDIWSGMCVKVVCDHLGLGVKSGLPYVWRKDRGSAIESLKKEWEGVKLTEEIVPFFQLVRLPQ TAATTEDCILEMATTVKQQLGPSNPVFTRAAEAMVEWVKLWKAVGSGSSPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16510		RGP5	reversibly glycosylated protei...		Potri.019G051700 [exp]	0	1
AT5G17280			unknown protein		Potri.007G017200 [exp]	10.39	0.6118
AT5G46170			F-box family protein (.1)		Potri.004G065900 [exp]	15.87	0.5616
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.010G093200 [exp]	22.36	0.5201	CUL3.2
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.007G093600 [exp]	26.83	0.5765	Pt-UBP3.1
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.014G127400 [exp]	31.08	0.5220
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	39.50	0.5557	ATTIM23.2
AT3G51100			unknown protein		Potri.005G117400 [exp]	40.42	0.5019
AT1G08315			ARM repeat superfamily protein...		Potri.001G028300 [exp]	45.83	0.5376
AT1G06340			Plant Tudor-like protein (.1)		Potri.009G151200 [exp]	48.83	0.5311
AT4G09580			SNARE associated Golgi protein...		Potri.013G113000 [exp]	51.00	0.4933

Compare expression of checked genes

Potri.019G051700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.