Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-XPO1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17020 1919 / 0 HIT2, ATXPO1, ATCRM1, XPO1A HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) AT3G03110 1822 / 0 CRM1B, XPO1B exportin 1B (.1) AT5G62600 46 / 0.0001 MOS14 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G088600 [exp] 2110 / 0 AT5G17020 1924 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Potri.012G073600 [exp] 51 / 4e-06 AT5G62600 1450 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.015G068600 [exp] 47 / 8e-05 AT5G62600 1454 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038248 [exp] 1986 / 0 AT5G17020 1953 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10025853 [exp] 1952 / 0 AT5G17020 1914 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10020393 [exp] 1920 / 0 AT5G17020 1878 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10009572 [exp] 1894 / 0 AT5G17020 1860 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10037671 [exp] 55 / 4e-07 AT1G72560 1433 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08767 [poplar] [flax] CRM1_C CRM1 C terminal
Representative CDS sequence Show only first row Show all	>Potri.019G052100.1 pacid=42773652 polypeptide=Potri.019G052100.1.p locus=Potri.019G052100 ID=Potri.019G052100.1.v4.1 annot-version=v4.1 ATGACTTCTTTGGTTATGGCGGCAGAGAAATTTAGGGATTTAAGTCAGGCGATTGATGTTCCTTTACTTGATGCTACTGTTGCTGCCTTCTATGGCACTG GATCTAAAGAAGAGAGGGCAGCTGCCGATCGCATTTTGCAGGACTTGCAAAGCAATCCAGATATGTGGCTTCAAGTGGTGCACATTCTACAAAATACAAA GAACCTAAACACCAAGTTCTTTGCCTTGCAGGTCCTAGAGGGTGTTATAAAATATAGATGGAATGCATTGCCTGTTGAACAACGAGATGGAATGAAAAAT TATATTTCAGAAGTCATTGTACAGCTTTCAAGTAACGAGGCGTCTTTTCGAATGGAAAGGCTGTATGTAAACAAGCTCAATGTTACTTTGGTCCAGATTC TCAAGCATGAGTGGCCAGCTAGGTGGCGAAGCTTTATTCCTGATCTTGTTGCAGCGGCAAAAACTAGTGAAACTATATGTGAGAATTGCATGGTTATATT GAAACTTCTAAGTGAAGAAGTTTTTGATTTCTCACGAGGAGAGATGACTCAACAGAAGATCAAAGAGCTTAAACAATCATTAAACAGTGAGTTTCAACTC ATCCATGAGTTATGCTTATATGTCCTATCAGCCTCCCAAAGAACCGAGCTTATTCAAGCAACATTGTCCACCTTGCATGCTTTTCTTTCTTGGATTCCCC TGGGCTATATTTTTGAATCTCCCCTGCTTGAAACACTTCTGAAATTTTTTCCCATGCCATCTTATCGGAACCTTACCCTTCAGTGTTTGACAGAGGTTGC GGCTCTTAATTTTGGGGATTTCTATAACATGCAGTACATTAAGATGTATAATTTTTTCATGGTCCAGTTACAGGCCATTCTTCCATCAACCACCAAGATC CCAGAGGCTTATGCAAATGGATCTAGTGAAGAACAAGCATTCATTCAGAATCTGGCACTGTTTTTCACTTCGTTTTACAAGTCTCATATTCGGGTGCTGG AGTCTTCTCAGGAGAATATATCTGCTCTGCTAATGGGTCTTGAGTATCTAATTAATATCTCATTTGTTGATGACACTGAGGTTTTTAAGGTTTGCTTGGA CTATTGGAACTCCTTGGTTTTGGAGCTTTTTGAGCCACACCATAATTTGGACACTCCTGCAGCCACTGTAAACATGATGGGATTGCAGGTAATGCCTTTG CTACATGGCATGGTTGATGGTTTAGGGTCACAAATTTTGCAGAGGAGGCAGCTTTATGCTGCTCCAATGTCCAAATTGAGAATGCTTATGATCTGTCGCA TGGCTAAACCCGAGGAGGTTCTGATAGTTGAAGATGAAAATGGTAATATTGTTCGTGAAACCATGAAGGACAATGATGTTCTTGTTCAATATAAGATTAT GAGAGAAACATTAATCTATTTGTCACATCTTGATCATGAGGATACTGAAAAGCAGATGTTGAAGAAATTAAGTAAACAACTGAGCGGTGAAGATTGGAAC TGGAACAACTTAAACACTTTATGCTGGGCAATTGGATCCATTTCTGGTTCCATGATGGAGGAACAGGAAAACCGATTTCTTGTGATGGTCATTCGTGATT TGCTGAATTTATGTGAAATCACGAAAGGGAAGGATAACAAAGCTGTTATTGCGAGTAACATCATGTATGTCGTTGGCCAGTACCCAAGATTTCTCAGAGC TCACTGGAAGTTCCTGAAAACTGTTGTCAATAAATTGTTCGAATTTATGCATGAAACTCATCCTGGAGTTCAGGACATGGCCTGTGACACATTCTTGAAA ATTGTCCAGAAATGCAAGCGGAAATTTGTTATTGTACAGGTTGGAGAAAGTGAGCCATTTGTATCTGAACTTCTATCTGGCCTTCCAACAACTGTTGCTG ATCTCGAGCCACATCAGATACATACATTTTATGAATCTGTTGGCCATATGATTCAAGCAGAATCTGATCTACAGAAGAGAGATGAATACATGCAGAGGTT GATGGATCTCCCTAACCAGAAATGGGCTGAAATTATAGGACAGGCACATCAAAGTGTAGATTTTCTGAAAGATCAAGAAGTGATCAGAACTGTGCTTAAT ATATTGCAGACCAATACAAGTGTTGCAAATTCTCTTGGGACATACTTTTTATCTCAAATTTCTCTTATATTTTTGGACATGCTTAACGTGTACAGAATGT ACAGTGAGCTTATATCAAGCAGTATTGCAGAAGGAGGGCCTTATGCATCTAAAACATCCTATGTGAAACTTTTGCGGTCTGTTAAGAGGGAGACACTTAA GCTCATCGAGACATTTTTGGACAAGGCCGAAGATCAACCACAAATTGGGAAGCAGTTCGTGCCCCCAATGATGGATCCTGTTCTTGGTGATTATGCTAGG AATTTGCCAGATGCTAGGGAATCAGAAGTTTTGTCACTTTTTGCAACAATTATAAACAAGTACAAAGCTGCAATGATAGAAGATGTACCTCGAATATTTG AAGCTGTTTTCCAGTGTACATTGGAGATGATAACCAAAAATTTCGAGGATTATCCAGAACATCGCCTTAAGTTCTTTTCGTTACTTCGTGCCATCGCTGC ACATTGTTTCCCTGCCTTGATTCGTTTGTCTAGTGAGCAACTGAAGCTTGTGATGGATTCAATTATATGGGCATTCCGTCATACAGAGAGGAATATAGCT GAGACTGGTCTAAACCTATTGTTGGAGATGCTGAAGAACTTTCAGGCGTCTGAGTTCTGTAATCAGTTCTACAGGTCATACTTTTTGACAATTGAGCAGG AAATATTTGCTGTATTGACAGATACATTTCACAAACCTGGTTTTAAGTTGCATGTTTTGGTGCTACAACACTTATTTTGCTCGGCGGAGAGTGGTGCTTT GTCAGAGCCTCTGTGGGATACTACAACAGTCCCTTATCCATATTTGAATAATGCTATGTTTGTTCGTGAGTACACCATTAAACTTCTGGGCACATCATTC CCTAACATGACTGCATCAGAGGTCACTCAATTTGTTAACGGACTATTTGAGTCAAAAAACAACCTGTCCATATTCAAGAATCACATTCGAGACTTTCTCG TGCAATCAAAGGAATTTTCTGCTCAGGATAATAAAGATCTCTATGCAGAAGAGGCTGCTGTTCAGAGGGAAAGGGAGCGACAAAGAATGCTTTCCATTCC AGGGCTTATTGCCCCTAATGAAATACAAGATGAGATGTTAGATTCTTAG
AA sequence Show only first row Show all	>Potri.019G052100.1 pacid=42773652 polypeptide=Potri.019G052100.1.p locus=Potri.019G052100 ID=Potri.019G052100.1.v4.1 annot-version=v4.1 MTSLVMAAEKFRDLSQAIDVPLLDATVAAFYGTGSKEERAAADRILQDLQSNPDMWLQVVHILQNTKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKN YISEVIVQLSSNEASFRMERLYVNKLNVTLVQILKHEWPARWRSFIPDLVAAAKTSETICENCMVILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQL IHELCLYVLSASQRTELIQATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVAALNFGDFYNMQYIKMYNFFMVQLQAILPSTTKI PEAYANGSSEEQAFIQNLALFFTSFYKSHIRVLESSQENISALLMGLEYLINISFVDDTEVFKVCLDYWNSLVLELFEPHHNLDTPAATVNMMGLQVMPL LHGMVDGLGSQILQRRQLYAAPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWN WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLK IVQKCKRKFVIVQVGESEPFVSELLSGLPTTVADLEPHQIHTFYESVGHMIQAESDLQKRDEYMQRLMDLPNQKWAEIIGQAHQSVDFLKDQEVIRTVLN ILQTNTSVANSLGTYFLSQISLIFLDMLNVYRMYSELISSSIAEGGPYASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYAR NLPDARESEVLSLFATIINKYKAAMIEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIAAHCFPALIRLSSEQLKLVMDSIIWAFRHTERNIA ETGLNLLLEMLKNFQASEFCNQFYRSYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCSAESGALSEPLWDTTTVPYPYLNNAMFVREYTIKLLGTSF PNMTASEVTQFVNGLFESKNNLSIFKNHIRDFLVQSKEFSAQDNKDLYAEEAAVQRERERQRMLSIPGLIAPNEIQDEMLDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	0	1	Pt-XPO1.1
AT5G58450			Tetratricopeptide repeat (TPR)...		Potri.013G152800 [exp]	3.16	0.7375
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	3.87	0.7348
AT1G63810			unknown protein		Potri.007G024600 [exp]	5.91	0.7380
AT1G73460			Protein kinase superfamily pro...		Potri.015G033400 [exp]	9.48	0.7256
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	19.07	0.6854
AT4G02480			AAA-type ATPase family protein...		Potri.012G096300 [exp]	19.59	0.7056
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Potri.008G052400 [exp]	21.77	0.7209
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	21.90	0.6968
AT5G14580			polyribonucleotide nucleotidyl...		Potri.001G347900 [exp]	23.66	0.7116
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.016G031900 [exp]	24.18	0.7055

Compare expression of checked genes

Potri.019G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.