Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36100 85 / 3e-18 unknown protein AT1G65090 80 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009554 [exp] 80 / 5e-16 AT1G65090 126 / 9e-34 unknown protein Lus10020377 [exp] 76 / 2e-14 AT1G65090 100 / 3e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G052300.1 pacid=42773367 polypeptide=Potri.019G052300.1.p locus=Potri.019G052300 ID=Potri.019G052300.1.v4.1 annot-version=v4.1 ATGGAAGAACCAGACACGGAGATGGAGTGGGATGAGATGATGAAACGATCAGAAGAAAATAATAGGTGTGGAAATGTTAGCTGGATATTGAACAAAGGAT TGTCGGTGGGAAAGATGATTTTGGTCACAGGTTTTGTGATATCTTCAGCACCTGTGTTTCTTCTTCCATTTGTTGTTGTCTCAGCAATTGGCTTTGCTTG TTCTGTCCCATACGGGCTTTTCTTGGCAAGCTATGCTCTCACCGAGCAGCTTATGTCTAAACTTCTTCCAGCATCTTCTCACATTTCCCTGGAATATTAT GGAACAAATAAAAATATCATTGTCGATGATTATAGAGAAGACGACGCATGCGCTGATCAGTTTGGAGGAGATATTATTGATATGGGAAAGGAAGGAGAGC CAAAATTATCAGTGGAAGTCAACAGTGCCAGGGGTGAGATGATTTTTGACAAAGAAAACGACTATGAAGTGCCCCAAGGATTTTGGAAGGATGAGAAACA TCCATTGGATGATAAAAATAACGCAACTCTTGTGGATGAAAATGGATATGAGGAAGATGTTGAAGATCAAGATCATAAACCTCCATCAAAAGTCCAACAA GCCGAGGAAGAAAAACCAGTCATAGAACAAGGCAGGGAAGCAATAGTTGGGGCGTCCCAAGTCATGATTGTAATTAATGAGGGAGATGAGGGAAGTGGCA GTAATCTTCGAAAAAAAGAGGAAGCACCATATGAATTAGCGAGGAGTTTGGCTGTAAATTTATCTCAGGATCATGATAAGGACGAAGATAAGGAACGGGT GATAGAGATGGTATCCGATGTCCTCATGGAGAAGCAACCAATTCAAGATGTCAGAGGGTTGTTAGAGAAGAAGGATTTTGGTGACAGTACCAAGGGAGGA GCGCAAGGGAATGTTGCCTATGTTAAACAAAACCTTCAACTGATTAGAGAGAAGGAACTAGTTGTGACTCCTCCAAACGAGGATGCAAGAGAAATTGCCG ATGAAAGTGGTTTGGACTTGTTTGATGATAAACAAGCAGTTGGTCCTCAGTGTTCTTACGCAGATTACCGAATTCCTGAAGGGAGTGAGCAATTAAGTTA CAAAGCTTATGAGGTTACTCTTCCAACAACGGTGGATGACTCCAAATGTACTGGAATTACCTCTGAAAATGACATCCATTTGGCTGCTGGTAATGTTAAG GTGTTGTACAGTGAGGACAAGATATGGAAACAAATTCGTGCAGTACGCACAATAGTGGGGTACAAAGCTTCTGTGCGAGGAACGTGTATTGATGAGCTCA AGGCACTGTATGTTTTCACCGGAGTGGAACCACCCGCCTCATTCAGGGATCCTTCCGATCTGGCGGAGGTCAATGACAAGCTTAAATTTCTTATGACCAT TGTTGGAGTGAAGTAG
AA sequence Show only first row Show all	>Potri.019G052300.1 pacid=42773367 polypeptide=Potri.019G052300.1.p locus=Potri.019G052300 ID=Potri.019G052300.1.v4.1 annot-version=v4.1 MEEPDTEMEWDEMMKRSEENNRCGNVSWILNKGLSVGKMILVTGFVISSAPVFLLPFVVVSAIGFACSVPYGLFLASYALTEQLMSKLLPASSHISLEYY GTNKNIIVDDYREDDACADQFGGDIIDMGKEGEPKLSVEVNSARGEMIFDKENDYEVPQGFWKDEKHPLDDKNNATLVDENGYEEDVEDQDHKPPSKVQQ AEEEKPVIEQGREAIVGASQVMIVINEGDEGSGSNLRKKEEAPYELARSLAVNLSQDHDKDEDKERVIEMVSDVLMEKQPIQDVRGLLEKKDFGDSTKGG AQGNVAYVKQNLQLIREKELVVTPPNEDAREIADESGLDLFDDKQAVGPQCSYADYRIPEGSEQLSYKAYEVTLPTTVDDSKCTGITSENDIHLAAGNVK VLYSEDKIWKQIRAVRTIVGYKASVRGTCIDELKALYVFTGVEPPASFRDPSDLAEVNDKLKFLMTIVGVK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36100			unknown protein		Potri.019G052300 [exp]	0	1
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Potri.004G038000 [exp]	1.73	0.8309	NAC005
AT3G60810			unknown protein		Potri.002G148400 [exp]	6.00	0.8080
AT4G23060		IQD22	IQ-domain 22 (.1)		Potri.001G108800 [exp]	70.95	0.7350
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	77.61	0.7481
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.006G266500 [exp]	82.84	0.7379
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.017G101700 [exp]	88.63	0.7225
AT1G80245			Spc97 / Spc98 family of spindl...		Potri.001G081300 [exp]	112.23	0.7338
					Potri.001G107400 [exp]	121.81	0.7207
AT3G53940			Mitochondrial substrate carrie...		Potri.006G091900 [exp]	132.55	0.7235
AT3G18420			Protein prenylyltransferase su...		Potri.008G143600 [exp]	149.04	0.6973

Compare expression of checked genes

Potri.019G052300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.