Plant FIBer expression Database

Potri.019G052400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17070 212 / 2e-68 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002137
[exp]
216 / 9e-71 AT5G17070 191 / 1e-60 unknown protein
Lus10008757
[exp]
200 / 3e-64 AT5G17070 186 / 4e-58 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09184 PPP4R2 PPP4R2
Representative CDS sequence
>Potri.019G052400.1 pacid=42773291 polypeptide=Potri.019G052400.1.p locus=Potri.019G052400 ID=Potri.019G052400.1.v4.1 annot-version=v4.1
ATGGTAGATATGGAAACGCCACCTTCAATTGCAAACGACGCTGCTGATAACACCATCTCCCCTCGCAATCTCGATGAAAATCCGGAGGATGCGTCCTCCA
TAAATCCTGGAGAAAAAGAATCCAAGCCTGAGATTGCTGGAGAAGAAGACGAAGAAGAAGTGAGAGGCATTCTACAAGTTATTGCATCTACTGGCAAATT
TTGGCATGATTGGGAAAAATTGAAGAGTGTGCTATCCTTTCAGCTGAAGCAGGTTCTGTCAGAATATCCCGAGGCAAAAATGACAACTAAGGAACAGGAG
GAAACTTATCAAGAGCTGGTGAAAAAGTTGGATGAAGCTCTCCACAACTTCGAAGAAGGTCCTCCTTTTACCCTACAGAGGCTTTGCGAGATTTTGTTGG
CAGCAAGACACCTCTATCCAAATCTCTCAAAGCTTGCCCTAGCCCTAGAAAAGAATTTATTGGTTACATCCACATTGGCTGTCTGTACTGATCCGTATCC
ACAAGCATTAGAAAAGCCGGGTGAATCTGATAAACCAAGTGAAGAACTGCAGGTGCAATCCAGCGCGGTACAGAATGGGGTTGAACCTGTGGTAGGAGAT
GGTGATGAAATAATGACTGAGGTAGAGGAGGCTGACATTGATGATGATATGACCATTGACATGGAAGCCTTGGAAGAAATAGTTGCATCATCAGAAACAA
ATTCTACATCAACCGGAAATTCTTGA
AA sequence
>Potri.019G052400.1 pacid=42773291 polypeptide=Potri.019G052400.1.p locus=Potri.019G052400 ID=Potri.019G052400.1.v4.1 annot-version=v4.1
MVDMETPPSIANDAADNTISPRNLDENPEDASSINPGEKESKPEIAGEEDEEEVRGILQVIASTGKFWHDWEKLKSVLSFQLKQVLSEYPEAKMTTKEQE
ETYQELVKKLDEALHNFEEGPPFTLQRLCEILLAARHLYPNLSKLALALEKNLLVTSTLAVCTDPYPQALEKPGESDKPSEELQVQSSAVQNGVEPVVGD
GDEIMTEVEEADIDDDMTIDMEALEEIVASSETNSTSTGNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17070 unknown protein Potri.019G052400
[exp]
0 1
AT1G11890 ATSEC22, SEC22 SECRETION 22, Synaptobrevin fa... Potri.003G069900
[exp]
2.00 0.8020 SEC22.2
AT3G17300 EMB2786 unknown protein Potri.010G152100
[exp]
4.58 0.7397
AT3G17590 CHE1, BSH BUSHY GROWTH, transcription re... Potri.010G004100
[exp]
10.77 0.6575 Pt-BSH.1
AT5G52370 unknown protein Potri.009G040100
[exp]
12.00 0.7565
AT3G27100 unknown protein Potri.017G069200
[exp]
12.72 0.7656
AT5G53000 TAP46 2A phosphatase associated prot... Potri.015G012200
[exp]
18.65 0.6845
AT4G00026 SD3 SEGREGATION DISTORTION 3, unkn... Potri.014G054400
[exp]
20.17 0.6765
AT1G79390 unknown protein Potri.008G081400
[exp]
22.49 0.6936
AT5G64130 cAMP-regulated phosphoprotein ... Potri.004G111900
[exp]
23.23 0.6890
AT5G18920 Cox19-like CHCH family protein... Potri.010G028000
[exp]
24.16 0.7392

Potri.019G052400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.