Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50240 1606 / 0 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G08720 168 / 2e-44 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G53930 172 / 3e-44 Protein kinase superfamily protein (.1.2) AT3G08730 166 / 1e-43 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G18700 170 / 2e-42 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT2G37840 165 / 1e-41 Protein kinase superfamily protein (.1.2) AT3G61960 160 / 7e-41 Protein kinase superfamily protein (.1.2) AT2G45490 153 / 7e-41 ATAUR3 ataurora3 (.1) AT3G06030 159 / 3e-40 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT2G25880 149 / 1e-39 ATAUR2 ataurora2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109600 [exp] 174 / 2e-46 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 171 / 3e-45 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.008G195800 [exp] 178 / 7e-45 AT5G18700 1833 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.010G031800 [exp] 175 / 5e-44 AT5G18700 1791 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.016G104900 [exp] 171 / 1e-43 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G092900 [exp] 170 / 2e-43 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G235000 [exp] 150 / 5e-40 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.014G107000 [exp] 158 / 1e-39 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G057700 [exp] 148 / 3e-39 AT4G32830 544 / 0.0 ataurora1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013766 [exp] 1743 / 0 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10039167 [exp] 1101 / 0 AT1G50240 952 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10039168 [exp] 600 / 0 AT1G50240 540 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10030182 [exp] 169 / 2e-43 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005135 [exp] 169 / 2e-43 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025213 [exp] 169 / 1e-42 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10012799 [exp] 170 / 2e-42 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10033979 [exp] 166 / 5e-42 AT5G18700 503 / 4e-162 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10012893 [exp] 153 / 2e-39 AT5G58380 446 / 3e-154 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10005487 [exp] 149 / 2e-39 AT4G32830 545 / 0.0 ataurora1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.019G052500.3 pacid=42774645 polypeptide=Potri.019G052500.3.p locus=Potri.019G052500 ID=Potri.019G052500.3.v4.1 annot-version=v4.1 ATGGGAGTTGAGAACTATCACGTGATAGAGCTAGTAGGTGAAGGCTCGTTTGGCAAAGTTTACAAAGGAAGGCGCAAGTACACGGGCCAGACTGTTGCGA TGAAATTTATTATGAAACATGGGAAAAGCGACAAGGATATTCATAATTTGAGACAGGAAATTGAGATTCTAAGAAAGCTGAAGCATGAAAATATAATTGA AATGCTTGATTCCTTTGAAAGCCCACAAGAGTTCTGTGTTGTCACGGAATTTGCGCAGGGTGAACTATTTGAGGTACTAGAGGATGACAAGTCCCTTCCT GAAGAACAGGTTCAAGCGATTGCGAAACAGTTGGTTAGAGCACTTCACTATTTGCATTCCAATCGTATCATCCATCGGGACATGAAGCCGCAAAATATAC TTATTGGTGCGGGTTCAGTTGTGAAGCTTTGCGATTTTGGCTTCGCACGTGCTATGTCCACAAATACTGTGGTTTTGCGATCCATAAAAGGCACACCACT ATACATGGCTCCAGAACTTGTACGGGAGCAACCATACAATCACAGTGCTGATTTATGGTCCCTTGGAGTTATCCTGTATGAATTATTTGTTGGCCAGCCT CCATTTTATACGAATTCAGTTTATGCACTCATCCGTCATATTGTTAAGGATCCAGTAAAATATCCTGATGACATGAGTCTGAATTTCAAAAGCTTTCTTA AGGGGTTGCTCAATAAGGTGCCTCAAAATAGATTGAGTTGGCCTATGCTTCTTGATCATCCATTTGTTAAAGAAACCTCAGAGGAGCTGGATGCCAGGGT AATGTGTGCTGCAACTTCTGCATCCAGAGAATGTGATGCAGCACGGAGGGGTGAAGAAAATAATATGCAAGCATCAACTGGTTTGATTGCCTCAAATCCT TGTAGAAGCAATTCTGTTGCTGCTTTTGAGAACTGTAATCCTCCGAAGTTTAACAGTGATGCTGATTTAAATTGTCCTAATGCAGTCACAGGCAGCTCCT CACCACAGGAGGAGTTCCCTGGATTTGCAAGTCCTAATGATGTTAAACAATCAGGCAATCAGATATTGGATAGATTGGAAAGCAATTCACTTACAGTTAA AGGTGCCAATATAATTGGTCAGGATAATGAAGCATTAACGATTATTCTACTACCATTGAGAAAATGGTCAAAAGAATCTCTGCATTCTTGGAGGGATCAA GATGTTCTTACTACAAAGCAGTCACTGAGAATTATTTCAAACTTAGCTGCAGCTGGTGCAACTGGTGGCATAGTTAATGAAATACTTAGTGAACTTCTTA ATTTCACTGCCAAAGTAGTCAGCTTGAAATCCTCTGAACTTAGTGACTTATTAGCAAAGAGTTTCTCTATAATAAAACTACAATTAGACAATATTGGGAG TGCCATTTCAACTTCATATTTCAAGCACTGGGTTGCCTTAACTGAAATTTTTTCACAGATTGTTGGTGGCCATGAAGAAACCTCGGGAAGTGTTCTGTTA GAGTCTTGTGCTTGCATTGCAACCATGTTATCTGCTGTAGATGATGGTCTTAAAGCAACTTCACTGACTTCTGAGGCAGCTCCTACTCCTGTAATGCATG AAGTGATGAAGCAGATTTTGGATCATGCGAAAACATGTGGATTAGTTGAAAATTTATCTCTTTGCTTAGCAACATCAGGCTCTAGTCTTGTTTCAGGTTC TTTGAACATGTTGCGTGCTGCCTGTGAAGCTTGCAGGGCTACATGGTCATTGATAGATGCGGTGGAAACTCTTTTCAGGAAAGAGAATCTCTATTTATTT CCATTAAATTCTTTGCAAAGCCATTCTTTACCCTGTCTTGACATTCGGGACCAGGAACGAAGTTCATTGGTTGGAACAGATTCAGCAAGAATCATTGAAG CAGTGACAAGAGCATTCTTGAGATTGAAAGCTGTGCAGGTGGCAATTTTCTGTTGCCTCAAGCAACGTATAGAGCCAGCCCTCTCTGCTAGTATTCAGAT CTTGTCAAGATGTTGTCTACATAATGCTATGGTTCCTGGTGTTCTTTGCGGCTTGCCAAGTTCTCTTCCTGTAACAACTGTTGTCAGTGGTGGAGGAGAT AAAACTATTCTTTCAGAAATATTTGCCATTTTATCTTGGTGTACATCTAATAAAGATCCTGAAACAAGTAACTTAAAGAGTAAATTAGCGAATTCTTCCA CGGTGGTTTTAAATTCATGCCTTCTCCTTGCAATCATTGCTCAATGTTTGAAGTCAACGGGAAGAAATTCAGCCTTGTTTATGCTGACATCCTCTCCAAA GAATCAGCTGTCCCGGCTTTCTATTATTGGCCATCAGTTCTCTCCTGACGACAAAATGAAAATTTCATTGGAACCTCATTGTGCATCGGCTATGCTGGCT CTCGCATCAATTCTATCTCTTGAAAGTGGAGCTTCTGTTGAATCTTCCATCTCAGAAATTGCGGTGCCTTTGATTCCTCGAAGTGCCACGCTTTGCGAAC ACCTCAAGATTTCACCTATCGAAGGAAATGAATTAGGTCCACGCAACATGAATGTTCTCTCATATTGGCATGGCCTTAGGGATGGTTGTGTGGGCTTGTT GGAATCCAGACTGAAATGGGGAGGTCCATTAGCTGTAAAACAGTCATGTGCAAGTGGCATGCCTCTGCTTCTTATTGATTTGTTAAGCAACAACCGTTCA ATTACCTCTCATCAAGGAATTGATAGCACAAAGGATCAAGTCGGGTTATCCCCCATTGGGGTTGTATGGGCAGTTTCTTCAATATGTCACTGCCTTTCTG GAGGCGCTTCGATTTTTCGTCAGATTTTACTCAGGAGTGAACATGTCAAGGATATCTCTGAACTGATCTCAGATGTGCATCTCAAGCTTGTGAAAAGCTG GAGTGGGCCAGGTGGAGGCAAGGATGGTGTCAGAGATGCTGTAAATGCAGTTATAGATATCTTAGCTTTTCCTTTTGTTGCTGTACAAAATACTCCTGGC TTGCCATCAGCTACTGCTTCCGTAAATAGCGGGTTCCTTCTCAACATGGGCTCTCCTGGGGGCAAAATATTCATCGAAGACAAGGACATGGCTAAAGCAA TTGAGGAAGACATGGGAAAGTATCTAAAAATACTTCTAGAGGTGGGATTACCTGACATTATACTTCGCTGCGTAGAATACATGGAGTTGAAAGATCTGGG AAGGCCAGTTGCATTTCTTGCCAAAATGATCGGCCACCGACCTTTTGCTATTCAATTAATAGGCAGAGGCTTGTTAGATCCAAACATGATGAAAAGATTG CTCGATAACATGAGTCCGAGAGAGGTCATGCTTGATGTTTTGATGATTATTTCTGATCTAGCACGCATGGATGAGGGTTTCTATGAACACATTAATGGGG CTTCTATATTGGAATTCTTGAAGAAGTTTCTCACACATGAAGATCCCAATATGCGTGCAAAAACCTGCAGTGCTGTAGGCAATATGTGTCGGCACAGCTC CTACTTCTACGGTTCGTTGGCAAGATCTCGCATCATAAGTCTTCTCATTGATCGATGTTCTGATCCAGACAAACGCACTAGGAAATTTGCATGCTTTGCT ATTGGAAATGCTGCCTACCATAATGACATGCTGTATGACGAGCTAAGAAGATCTATACCTCAACTAGCAAATTTGCTGCTCTCAGCAGAGGAAGACAAGA CTAAAGCAAATGCTGCCGGTGCTTTAAGCAATCTTGTTCGCAACTCGAGCAACCTTTGTGATGACATTGTGTCTAAAGGAGCCATGCAGGCTTTACTAAA GTTGGTAGCTGACTGTTCAGCAGTAGCCCTAAACCCCATGAGGAAAGATGCTGTGAATGAATCACCATTAAAGATAGCTCTCTTTTCATTGGCAAAGATG TGTGCACATCTGCCGTGCAGACAATTCCTCCGTTCATCTGAGTTGTTTCCGGTGATTGGAAGACTACGGCAGTCCCCAGAAGCAACAATTGCCAATTATG CCACTGTTATCATCAGGAGAGTGGCTGATAGCTGA
AA sequence Show only first row Show all	>Potri.019G052500.3 pacid=42774645 polypeptide=Potri.019G052500.3.p locus=Potri.019G052500 ID=Potri.019G052500.3.v4.1 annot-version=v4.1 MGVENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKSDKDIHNLRQEIEILRKLKHENIIEMLDSFESPQEFCVVTEFAQGELFEVLEDDKSLP EEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHSADLWSLGVILYELFVGQP PFYTNSVYALIRHIVKDPVKYPDDMSLNFKSFLKGLLNKVPQNRLSWPMLLDHPFVKETSEELDARVMCAATSASRECDAARRGEENNMQASTGLIASNP CRSNSVAAFENCNPPKFNSDADLNCPNAVTGSSSPQEEFPGFASPNDVKQSGNQILDRLESNSLTVKGANIIGQDNEALTIILLPLRKWSKESLHSWRDQ DVLTTKQSLRIISNLAAAGATGGIVNEILSELLNFTAKVVSLKSSELSDLLAKSFSIIKLQLDNIGSAISTSYFKHWVALTEIFSQIVGGHEETSGSVLL ESCACIATMLSAVDDGLKATSLTSEAAPTPVMHEVMKQILDHAKTCGLVENLSLCLATSGSSLVSGSLNMLRAACEACRATWSLIDAVETLFRKENLYLF PLNSLQSHSLPCLDIRDQERSSLVGTDSARIIEAVTRAFLRLKAVQVAIFCCLKQRIEPALSASIQILSRCCLHNAMVPGVLCGLPSSLPVTTVVSGGGD KTILSEIFAILSWCTSNKDPETSNLKSKLANSSTVVLNSCLLLAIIAQCLKSTGRNSALFMLTSSPKNQLSRLSIIGHQFSPDDKMKISLEPHCASAMLA LASILSLESGASVESSISEIAVPLIPRSATLCEHLKISPIEGNELGPRNMNVLSYWHGLRDGCVGLLESRLKWGGPLAVKQSCASGMPLLLIDLLSNNRS ITSHQGIDSTKDQVGLSPIGVVWAVSSICHCLSGGASIFRQILLRSEHVKDISELISDVHLKLVKSWSGPGGGKDGVRDAVNAVIDILAFPFVAVQNTPG LPSATASVNSGFLLNMGSPGGKIFIEDKDMAKAIEEDMGKYLKILLEVGLPDIILRCVEYMELKDLGRPVAFLAKMIGHRPFAIQLIGRGLLDPNMMKRL LDNMSPREVMLDVLMIISDLARMDEGFYEHINGASILEFLKKFLTHEDPNMRAKTCSAVGNMCRHSSYFYGSLARSRIISLLIDRCSDPDKRTRKFACFA IGNAAYHNDMLYDELRRSIPQLANLLLSAEEDKTKANAAGALSNLVRNSSNLCDDIVSKGAMQALLKLVADCSAVALNPMRKDAVNESPLKIALFSLAKM CAHLPCRQFLRSSELFPVIGRLRQSPEATIANYATVIIRRVADS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	0	1
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	1.00	0.9568
AT4G37110			Zinc-finger domain of monoamin...		Potri.012G044400 [exp]	1.41	0.9549
AT5G05240			Uncharacterised conserved prot...		Potri.013G091100 [exp]	1.73	0.9480
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	3.87	0.9414
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	5.47	0.9353
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	5.65	0.9140
AT3G06840			unknown protein		Potri.003G073200 [exp]	6.70	0.8914
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	6.92	0.9429
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	7.93	0.9077
AT1G18090			5'-3' exonuclease family prote...		Potri.015G041400 [exp]	8.36	0.9345

Compare expression of checked genes

Potri.019G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.