Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PIN12,PIN9.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16530 472 / 6e-168 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G15100 241 / 2e-77 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G57090 185 / 3e-53 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G73590 184 / 5e-53 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT2G01420 182 / 2e-52 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G23080 179 / 1e-51 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 179 / 7e-51 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G77110 158 / 1e-43 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087000 [exp] 568 / 0 AT5G16530 513 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.017G078300 [exp] 268 / 8e-88 AT5G15100 358 / 5e-123 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.004G124200 [exp] 265 / 1e-86 AT5G15100 378 / 2e-130 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 189 / 8e-55 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 188 / 2e-54 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 184 / 2e-54 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) Potri.006G037000 [exp] 184 / 3e-53 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 184 / 6e-53 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 184 / 1e-52 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020193 [exp] 524 / 0 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10026994 [exp] 518 / 0 AT5G16530 532 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10010303 [exp] 256 / 8e-83 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10013422 [exp] 254 / 5e-82 AT5G15100 397 / 4e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10018006 [exp] 184 / 3e-57 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009685 [exp] 189 / 6e-57 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 190 / 5e-55 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 184 / 1e-52 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 184 / 1e-52 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10012680 [exp] 168 / 2e-50 AT2G01420 245 / 8e-78 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.019G052800.1 pacid=42773918 polypeptide=Potri.019G052800.1.p locus=Potri.019G052800 ID=Potri.019G052800.1.v4.1 annot-version=v4.1 ATGATCGGGTGGGCAGATATTTACAAGGTAGTGGTGGCCATGGTGCCACTCTATGTGGCACTGATGTTGGGGTATGGTTCTGTCAGGTGGTGGAAGGTAT TCACACCAGAGCAGTGCGGCGCCATAAACCGCTTTGTTTGTTATTTCACTCTCCCATTCTTCACCTTTGAGTTCACTGCTCATGTTGATCCTTTCAAAAT GAATTACCTATTTATTGGCGCCGATGCCATATCGAAGCTCATTATAGTGGTTGTGCTCGCCGTTTGGGCTAAGTGGAGTGGCAAGGGAAGCTACGGCTGG TCCATTACCAGCTTCTCTCTTTGTACCCTAACCAATTCTCTTGTTCTGGGTGTTCCTCTGATTAAAGCCATGTATGGGCCGACGGCAGTTGATCTTGTTG TTCAATCGTCTGTCATCCAATCTATTATATGGCTTACAATGTTGTTGCTCGTATTAGAATTTCGAAGATCAGGACTTGGCGTTTCATCCAGCAATCCTGA CAAGGATTTAGAAGGAAATGCAGACAGCACGGTAAGCTCTAGGCCTGCTTTCTGGTGCTTGATGAAGACTGTGGGGGTGAAACTTGCCATGAATCCCAAT TCATACGCTTGCATTATTGGTCTTGTTTGGGCCTTCATAGCTAAAAGGTGGCGTTTTGAAATGCCGAGCATAATGGAAGGTTCTATACTGATCATGTCGA AAACTGGCACAGGAACTGCCATGTTTAGCATGGGGATCTTCATGGCTTTGCAGGAAAAAGTGATTGCCTGTGGCGCAAGTCTAACTGTTATTGGGATGGT TTTAAGGTTTATAGCAGGACCCGCTGCTATGGCTATTGGATCAATCGCTGTGGGCTTGCGCGGCGATGTCTTACGTGTTGCTATCATTCAGGCTGCTTTC CCACAGGCAATTATATCCTTCATCTTTGCTCAAGAATACGGATTACATGCAGAGGTGCTAAGCACAGCTGTAATCTTCGGAACCATCGTGGCTCTTCCGG TGTTAATCGCTTATTATGCAATTTTAGACTTTGTACATTGA
AA sequence Show only first row Show all	>Potri.019G052800.1 pacid=42773918 polypeptide=Potri.019G052800.1.p locus=Potri.019G052800 ID=Potri.019G052800.1.v4.1 annot-version=v4.1 MIGWADIYKVVVAMVPLYVALMLGYGSVRWWKVFTPEQCGAINRFVCYFTLPFFTFEFTAHVDPFKMNYLFIGADAISKLIIVVVLAVWAKWSGKGSYGW SITSFSLCTLTNSLVLGVPLIKAMYGPTAVDLVVQSSVIQSIIWLTMLLLVLEFRRSGLGVSSSNPDKDLEGNADSTVSSRPAFWCLMKTVGVKLAMNPN SYACIIGLVWAFIAKRWRFEMPSIMEGSILIMSKTGTGTAMFSMGIFMALQEKVIACGASLTVIGMVLRFIAGPAAMAIGSIAVGLRGDVLRVAIIQAAF PQAIISFIFAQEYGLHAEVLSTAVIFGTIVALPVLIAYYAILDFVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Potri.019G052800 [exp]	0	1	PIN12,PIN9.1
					Potri.010G247750 [exp]	7.74	0.8704
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Potri.008G072800 [exp]	10.95	0.8357
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Potri.002G200100 [exp]	11.18	0.7827
AT4G10780			LRR and NB-ARC domains-contain...		Potri.001G405025 [exp]	20.59	0.8631
					Potri.010G173050 [exp]	28.42	0.7916
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102700 [exp]	30.00	0.8600
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	38.20	0.8551
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166400 [exp]	42.66	0.8534
					Potri.011G167566 [exp]	50.19	0.8214
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.002G015400 [exp]	53.21	0.7847

Compare expression of checked genes

Potri.019G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.