Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ZFN3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02830 526 / 0 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 430 / 2e-149 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT2G47850 360 / 7e-121 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 310 / 2e-101 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 294 / 3e-95 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G04990 258 / 6e-82 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 249 / 8e-78 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G32930 223 / 7e-68 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT5G63260 222 / 2e-67 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 193 / 1e-55 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G086800 [exp] 808 / 0 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 349 / 2e-116 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 340 / 1e-112 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.014G159500 [exp] 315 / 1e-103 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 315 / 2e-103 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 223 / 1e-67 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 219 / 3e-66 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.008G080300 [exp] 201 / 8e-59 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.010G176300 [exp] 200 / 2e-58 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020196 [exp] 699 / 0 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 697 / 0 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10033962 [exp] 328 / 3e-108 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002880 [exp] 321 / 5e-105 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10013476 [exp] 312 / 3e-102 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 309 / 2e-101 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10007941 [exp] 308 / 2e-100 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 305 / 2e-100 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035330 [exp] 284 / 4e-91 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 272 / 4e-86 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.019G053200.2 pacid=42774073 polypeptide=Potri.019G053200.2.p locus=Potri.019G053200 ID=Potri.019G053200.2.v4.1 annot-version=v4.1 ATGGATTTTGATGCCGGAATCCCGATGTCTCGTGGTGGTGGTGGTCTACCAGCTGTGACCGAGGAAACTTCTCTGTCACCGTCTTTAAGCGAAGATGCAA TGTGGCAAATGAACCTGAGATCGAGTGAGACAATGGAAGCTGGGCCGTATCCCGAGCGTCCTGGAGAGCCGGATTGTTCTTATTACATAAGAACAGGCCT CTGTAGATTTGGGCCTACCTGCCGATTTAATCATCCTCCTAATCGGAAGCTGGCTATTGCAGCGGCCAGGATGAAGGGGGAATTCCCAGAAAGAATAGGA CAACCAGAATGCCAGTACTACTTGAAGACTGGAACTTGCAAGTTTGGAGCCACGTGCAAGTTTCATCACCCTAGAGACAAGGCTGGGGTTTCTGGAAGAG TGTCTTTAAATATTTTGGGCTATCCACTTCGACTGAATGAGATGGAGTGTGCTTATTACTTAAGAACAGGACAGTGCAAGTTTGGTAGCACTTGTAAATT TCATCATCCTCAACCAGCTAATGTGATGGTTCCTTTGCGTGGCTCTCCTGTTTACCCTACTGTCAATTCTCCAACTACCCCTGGTCAGCAATCTTATCCA GGAGGACTTGCAACAAACTGGTCAAGAGCATCTTTTATTACCAGCCCACGCTGGCAAGCTCCTTCAAATTATACACCTTTGATTCTACCTCAGGGAGTCG TATCAGTCCCTGGCTGGAATGCATACAGTGGTCAGGTTGGGTCGGTATCATCTCCAGAGAGTCAGCAACAAACAGGAAACAGTCAGATATATGGAACCTC ACGCCAGAATGAATCAGTCAATGCAGGATCTCAAGGGACATTTTCTCCATACCGTTCTGATTCTGTCCCCATGGGATTTTATGCCTTGCAAAGAGAGAGT GTTTTTCCTGAGAGACCTGGTCAGCCTGAATGCCAGTTTTACATGAAGACCGGAGACTGTAAGTTTGGTGCAGTTTGTAGATTCCACCATCCAAGGGAGA GGCTAATTCCTGCTCCAGACTGTGTCTTGAGTGCAATAGGGCTGCCTTTACGTCCGGGAGAACCTTTATGCATCTTCTACTCTCGTTATGGCATCTGCAA GTTTGGTCCAAGTTGCAAGTTTCACCACCCTATGGGAATTTTCACATACAATCTCACAGCATCATCTTCAGCTGATGCCCCTGTTCGACGGTTATTGGGG TCCTCATCAGGATCTGCCGCGTTAACTTTATCATCGGAAGGGCTTGTTGAAGCCGGATCAACAAAGCCAAGGCGACTTTCACTATCAGAGCCTAGACAAA TGCCACCTGGTGATGATAATATTGACACGGGGGGATGA
AA sequence Show only first row Show all	>Potri.019G053200.2 pacid=42774073 polypeptide=Potri.019G053200.2.p locus=Potri.019G053200 ID=Potri.019G053200.2.v4.1 annot-version=v4.1 MDFDAGIPMSRGGGGLPAVTEETSLSPSLSEDAMWQMNLRSSETMEAGPYPERPGEPDCSYYIRTGLCRFGPTCRFNHPPNRKLAIAAARMKGEFPERIG QPECQYYLKTGTCKFGATCKFHHPRDKAGVSGRVSLNILGYPLRLNEMECAYYLRTGQCKFGSTCKFHHPQPANVMVPLRGSPVYPTVNSPTTPGQQSYP GGLATNWSRASFITSPRWQAPSNYTPLILPQGVVSVPGWNAYSGQVGSVSSPESQQQTGNSQIYGTSRQNESVNAGSQGTFSPYRSDSVPMGFYALQRES VFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSAIGLPLRPGEPLCIFYSRYGICKFGPSCKFHHPMGIFTYNLTASSSADAPVRRLLG SSSGSAALTLSSEGLVEAGSTKPRRLSLSEPRQMPPGDDNIDTGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.019G053200 [exp]	0	1	ZFN3.2
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Potri.001G355600 [exp]	2.23	0.8295	VTC2.2
AT3G20270			lipid-binding serum glycoprote...		Potri.008G004500 [exp]	6.00	0.8507
AT2G25530			AFG1-like ATPase family protei...		Potri.006G252300 [exp]	12.24	0.7629
AT5G61670			unknown protein		Potri.012G114200 [exp]	14.49	0.8415
AT4G32590			2Fe-2S ferredoxin-like superfa...		Potri.006G247300 [exp]	20.42	0.8349
AT3G26780		MEF14	mitochondrial editing factor 1...		Potri.014G145900 [exp]	20.71	0.7649
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.014G000400 [exp]	45.59	0.8140
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.001G094100 [exp]	54.55	0.7698
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.007G006600 [exp]	66.48	0.7886
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G342800 [exp]	104.46	0.7966

Compare expression of checked genes

Potri.019G053200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.