Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36230 694 / 0 ARM repeat superfamily protein (.1) AT1G65220 662 / 0 ARM repeat superfamily protein (.1) AT2G34970 54 / 2e-07 Trimeric LpxA-like enzyme (.1) AT4G18300 50 / 2e-06 Trimeric LpxA-like enzyme (.1) AT1G77840 47 / 2e-05 Translation initiation factor IF2/IF5 (.1) AT3G02270 47 / 2e-05 Trimeric LpxA-like enzyme (.1) AT1G36730 44 / 0.0001 Translation initiation factor IF2/IF5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085600 [exp] 783 / 0 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.005G045200 [exp] 47 / 2e-05 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.017G122200 [exp] 45 / 5e-05 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042703 [exp] 666 / 0 AT5G36230 631 / 0.0 ARM repeat superfamily protein (.1) Lus10018182 [exp] 655 / 0 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1) Lus10029667 [exp] 362 / 1e-125 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10004057 [exp] 53 / 2e-07 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10033841 [exp] 51 / 1e-06 AT2G34970 880 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10018991 [exp] 51 / 1e-06 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10002283 [exp] 50 / 2e-06 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 47 / 2e-05 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1) Lus10010980 [exp] 42 / 0.0005 AT1G36730 184 / 2e-55 Translation initiation factor IF2/IF5 (.1) Lus10029666 [exp] 0 / 1 AT5G36230 246 / 5e-84 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02020 [poplar] [flax] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Potri.019G053600.1 pacid=42774438 polypeptide=Potri.019G053600.1.p locus=Potri.019G053600 ID=Potri.019G053600.1.v4.1 annot-version=v4.1 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCTGCTCCACTGGACCCTGCAGCATTTGCTGATGCAG TGGTCCAGATTTACTTGGATAATGCTGGTGATTTGGAACTTGTTGCTAAGAGCATTGAATCTGCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTT TGAGGTTGTTTTCACAGGAGGCCGTACACAACCTGGCACAACAAAACCTGATGAAGGTGAACGCCATCCTTACTCTATAATAGATTGTGAGCCTACACGG GAAATCATTTTACCATCAGTAATCTACACGCAGAAAATTCTGCGCCGCAAGCCATTTCTCATTAAGAACCTTGAAAATGTTATGCGAAGGTTCCTGCAGT CACTGGAACTTTTTGAAGAAAATGAAAGGAAGAAGCTGGCCATTTTCACGGCTCTTGCATTCTCCCAGAAATTATCTGGGTTGCCACCCGAGACTGTTTT TCAGCCTCTGCTTAAGGATAACCTTGTGGCCAAAGGGATAGTTCTTTCATTTATAACAGACTTCTTCAAGGAGTATCTGGTTGATAATAGCCTTGATGAT CTGATTTCAATTCTGAAACGGGGAAAAATGGAGGAGAACCTTATGGACTTCTTCCCATCTGCAAAGCGATCTGCTGAAGGTTTCTCTGAGCATTTCTCCA AGGAAGGACTGATACCTTTGGTTGAATATAATGAAAAGAAAATATTTGAGGTGAAGCTGAAGGAAATGAAATCTGCATTAACAACTCAGATAGCAGAGGA AGCTGACATGTCTGAAGTCATCGACACAGTGAAACAACGGGTTAAAGATGCTAAGTTACCAGACATTGAAATTGTGCGTATTTTGTGGGATGTATTAATG GATGCTGTACAATGGTCTGGGAAGAATCAGCAGCAGAATGCCAATTCAGCTTTGCGCCAGGTAAAGACATGGGCACAACTCTTAAATACATTTTGCACCA ATGGCAAACTTGAGCTGGAACTCTTGTACAAAGTTCAGATGCAATGCTATGAGGATGCTAAGTTGATGAAGCTATTTCCTGAGATTGTGAGGTCTCTCTA TGATCAGGACGTGCTTGCAGAAGACACCATTCTGCACTGGTTCCGCAAAGGAACAAATCCCAAGGGCAGGCAAACCTTTGTGAAGGCCCTGGAGCCCTTT GTTAACTGGCTGGAAGAGGCTGAGGAAGAGGAATGA
AA sequence Show only first row Show all	>Potri.019G053600.1 pacid=42774438 polypeptide=Potri.019G053600.1.p locus=Potri.019G053600 ID=Potri.019G053600.1.v4.1 annot-version=v4.1 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLDNAGDLELVAKSIESADLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIDCEPTR EIILPSVIYTQKILRRKPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFITDFFKEYLVDNSLDD LISILKRGKMEENLMDFFPSAKRSAEGFSEHFSKEGLIPLVEYNEKKIFEVKLKEMKSALTTQIAEEADMSEVIDTVKQRVKDAKLPDIEIVRILWDVLM DAVQWSGKNQQQNANSALRQVKTWAQLLNTFCTNGKLELELLYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNPKGRQTFVKALEPF VNWLEEAEEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36230			ARM repeat superfamily protein...		Potri.019G053600 [exp]	0	1
AT5G58030			Transport protein particle (TR...		Potri.018G110000 [exp]	3.31	0.8760
AT5G32440			Ubiquitin system component Cue...		Potri.018G127200 [exp]	6.24	0.8084
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Potri.010G093600 [exp]	10.95	0.8272	SUC3.1
AT1G43890		ATRAB-C1, RAB18...	RAB GTPASE HOMOLOG 18-1, ARABI...		Potri.007G105500 [exp]	14.42	0.8357	Pt-RAB1.7
AT4G14500			Polyketide cyclase/dehydrase a...		Potri.010G076500 [exp]	16.61	0.8651
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Potri.011G135600 [exp]	24.28	0.8013
AT4G16444			unknown protein		Potri.005G101300 [exp]	29.17	0.8172
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G272700 [exp]	34.85	0.8511
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Potri.004G050800 [exp]	35.24	0.8213	SYP61.1
AT1G09150			pseudouridine synthase and arc...		Potri.013G013700 [exp]	43.37	0.8325

Compare expression of checked genes

Potri.019G053600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.