Plant FIBer expression Database

Potri.019G053700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02780 427 / 4e-152 IDI2, IPIAT1, IPP2 ATISOPENTENYL DIPHOSPHE ISOMERASE 2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (.1)
AT5G16440 424 / 2e-150 IDI1, IPP1 isopentenyl diphosphate isomerase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026834
[exp]
451 / 3e-161 AT3G02780 420 / 2e-149 ATISOPENTENYL DIPHOSPHE ISOMERASE 2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (.1)
Lus10020210
[exp]
446 / 5e-159 AT3G02780 420 / 1e-149 ATISOPENTENYL DIPHOSPHE ISOMERASE 2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0261 NUDIX PF00293 NUDIX NUDIX domain
Representative CDS sequence
>Potri.019G053700.1 pacid=42774520 polypeptide=Potri.019G053700.1.p locus=Potri.019G053700 ID=Potri.019G053700.1.v4.1 annot-version=v4.1
ATGTCTCTGACCTCTCGCATTCTATTTACTCCTCCCACCACCATTAAACTCTCCCCTTCCATCCCTCCCCCTTCTGCCTTTTGTCCTCTCAAAACCCCTT
CCCTCTCTTCCAATTCTCCCCATCCATCCCTCCTCCGCTTCACCCATATTACAAAGTCGCCGTCCTCTCTATTCGCGAGGGTCTTTTCGTCCTTCAACCC
CACCGCCACCACCACCCCCCCAACCATGGGTGACGCTCCTGATGCTGGCATGGACGCTGTCCAGAGACGCCTTATGTTCGAGGACGAATGCATTTTAGTG
GATGAGAATGATCGGGTTGTTGGTCATGACTCCAAGTATAATTGTCATTTGTGGGAAAATATTTTGAAGGGAAATGCCTTGCATAGAGCTTTTAGTGTGT
TTCTCTTCAACTCAAAACATGAGCTACTCCTTCAGCAACGCTCTGCGACAAAGGTAACATTTCCCCTGGTGTGGACTAACACTTGCTGCAGCCATCCTTT
ATATCGTGAATCTGAGCTTATACATGAGGATGCCCTTGGGGTGAGGAATGCTGCACAGAGGAAGCTTTTCGATGAGCTTGGTATTCCTGCTGAAGATGTG
CCAGTTGATCAGTTCAGTCCTCTGGGGCGTATATTGTACAAGGCACCTTCTGATGGAAAGTGGGGGGAGCATGAACTTGATTACCTGCTCTTCATTGTTC
GTGATGTTAGCGTAAATCCAAACCCTGATGAGGTAGCTGACATCAAGTACGTTAACCAGGATGAATTGAAGGAGCTTCTGAGAAAAGCAGATGCTGGCGA
GGAAGGTTTGAAGTTGTCACCGTGGTTCAGACTAGTTGTGGACAACTTCCTGTTCAAGTGGTGGGACCATGTCGAGAAAGGAACTCTAGAGGAAGCAGCT
GACATGAAAGCGATTCACAAGCTGACTTGA
AA sequence
>Potri.019G053700.1 pacid=42774520 polypeptide=Potri.019G053700.1.p locus=Potri.019G053700 ID=Potri.019G053700.1.v4.1 annot-version=v4.1
MSLTSRILFTPPTTIKLSPSIPPPSAFCPLKTPSLSSNSPHPSLLRFTHITKSPSSLFARVFSSFNPTATTTPPTMGDAPDAGMDAVQRRLMFEDECILV
DENDRVVGHDSKYNCHLWENILKGNALHRAFSVFLFNSKHELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIHEDALGVRNAAQRKLFDELGIPAEDV
PVDQFSPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVADIKYVNQDELKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTLEEAA
DMKAIHKLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02780 IDI2, IPIAT1, I... ATISOPENTENYL DIPHOSPHE ISOMER... Potri.019G053700
[exp]
0 1
AT5G61220 LYR family of Fe/S cluster bio... Potri.009G079800
[exp]
5.65 0.8713
AT2G18245 alpha/beta-Hydrolases superfam... Potri.007G023000
[exp]
10.67 0.8061
AT2G37000 TCP TCP11 TCP family transcription facto... Potri.016G094800
[exp]
10.77 0.8563
AT1G64950 CYP89A5 "cytochrome P450, family 89, s... Potri.007G088154
[exp]
14.42 0.8692
AT1G07310 Calcium-dependent lipid-bindin... Potri.008G064900
[exp]
42.42 0.8056
AT2G42080 Chaperone DnaJ-domain superfam... Potri.016G045401
[exp]
43.54 0.8431
AT5G61640 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONIN... Potri.012G091100
[exp]
47.77 0.8336 Pt-PMSR1.2
AT2G17710 unknown protein Potri.005G107800
[exp]
52.97 0.8212
AT1G45170 unknown protein Potri.002G262700
[exp]
72.74 0.8266
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Potri.016G021200
[exp]
79.23 0.7999

Potri.019G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.